Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00013899m |
Family | CE8 |
Protein Properties | Length: 285 Molecular Weight: 31206.3 Isoelectric Point: 7.3993 |
Chromosome | Chromosome/Scaffold: 018386 Start: 1 End: 2052 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 1 | 278 | 0 |
QAAVDSLPLINLARVVIKVNAGTYTEKVSISPMRAFVTVEGAGADRTVVQWGDTAETVGSLGRPMGTFGSATFAVNSMFFVAKNITFKNTAPVPRPGALG KQGVALRISADNAAFVGCNFLGAQDTLYDHLGRHYYRDCYIEGSVDFIFGNALSLYEGCHVHAIARNYGALTAQSRQSLLEDTGFSFVNCRVTGSGALYL GRAWGTFSRVVFAYTYMDNIIIPRGWYNWGDPTREMTVFYGQYKCTGPGANYAGRVQWSRELTDEEAKPFISLDFIDG |
Full Sequence |
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Protein Sequence Length: 285 Download |
QAAVDSLPLI NLARVVIKVN AGTYTEKVSI SPMRAFVTVE GAGADRTVVQ WGDTAETVGS 60 LGRPMGTFGS ATFAVNSMFF VAKNITFKNT APVPRPGALG KQGVALRISA DNAAFVGCNF 120 LGAQDTLYDH LGRHYYRDCY IEGSVDFIFG NALSLYEGCH VHAIARNYGA LTAQSRQSLL 180 EDTGFSFVNC RVTGSGALYL GRAWGTFSRV VFAYTYMDNI IIPRGWYNWG DPTREMTVFY 240 GQYKCTGPGA NYAGRVQWSR ELTDEEAKPF ISLDFIDGLQ WLWL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 8.0e-109 | 1 | 282 | 282 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 7.0e-111 | 1 | 282 | 283 | + probable pectinesterase | ||
PLN02304 | PLN02304 | 3.0e-114 | 1 | 282 | 290 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 8.0e-116 | 2 | 282 | 283 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 0 | 1 | 282 | 282 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACR36293.1 | 0 | 1 | 284 | 107 | 391 | unknown [Zea mays] |
GenBank | EEC79546.1 | 0 | 1 | 284 | 115 | 398 | hypothetical protein OsI_20666 [Oryza sativa Indica Group] |
RefSeq | NP_001044216.1 | 0 | 1 | 284 | 100 | 384 | Os01g0743200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001056077.1 | 0 | 1 | 284 | 115 | 398 | Os05g0521600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002440102.1 | 0 | 1 | 284 | 123 | 406 | hypothetical protein SORBIDRAFT_09g026060 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 3 | 282 | 25 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 7.00649e-43 | 3 | 282 | 21 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 5e-25 | 1 | 270 | 48 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 7e-18 | 16 | 270 | 36 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 7e-18 | 16 | 270 | 36 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CN126747 | 241 | 45 | 285 | 0 |
DT759916 | 274 | 14 | 284 | 0 |
DT748463 | 248 | 40 | 284 | 0 |
EH701256 | 259 | 3 | 261 | 0 |
EE105585 | 249 | 1 | 249 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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