Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10015978m |
Family | CE8 |
Protein Properties | Length: 401 Molecular Weight: 44129.2 Isoelectric Point: 5.3621 |
Chromosome | Chromosome/Scaffold: 2 Start: 12475242 End: 12476772 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 85 | 373 | 0 |
TVDLHGCGNFSSVQSAIDSVPDLSPSKTFIIVNSGVYREKITVNENKTNIVMQGRGYQNTSIEWNDTAKSTGGTAYSFSFVVFAANFTAYNISFKNNAPE PDPGEDDAQAVALRIEGDQCAFYGCGFYGAQDTLLDNKGRHFFKNCFIQGSIDFIFGNGRSLYQDCTINSIAKENTTGVSGSITAHARQTEDEQTGFSFV NCKIDGSGKVWLGRAWGAYATIVFSNTYMSGIITPEGWNNWGDPSREKTVIFGEHNCYGEGANYKGRVSYGKQLTDSEVSSFTDISYID |
Full Sequence |
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Protein Sequence Length: 401 Download |
MPTKTVLTSL VIALLSTILA LYSVLLPSSL SSIATTIITN SQLGELSIYS TIFGHIHQHH 60 HVPIKCCEKW ESRLTRMYRA SLVLTVDLHG CGNFSSVQSA IDSVPDLSPS KTFIIVNSGV 120 YREKITVNEN KTNIVMQGRG YQNTSIEWND TAKSTGGTAY SFSFVVFAAN FTAYNISFKN 180 NAPEPDPGED DAQAVALRIE GDQCAFYGCG FYGAQDTLLD NKGRHFFKNC FIQGSIDFIF 240 GNGRSLYQDC TINSIAKENT TGVSGSITAH ARQTEDEQTG FSFVNCKIDG SGKVWLGRAW 300 GAYATIVFSN TYMSGIITPE GWNNWGDPSR EKTVIFGEHN CYGEGANYKG RVSYGKQLTD 360 SEVSSFTDIS YIDGDQWLNQ SNTLSEHISE DHRDELIGFY * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 8.0e-98 | 78 | 378 | 309 | + pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-99 | 57 | 382 | 333 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 5.0e-109 | 83 | 378 | 297 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 1.0e-129 | 81 | 378 | 305 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 7.0e-141 | 55 | 382 | 337 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO22722.1 | 0 | 33 | 400 | 34 | 407 | putative pectinesterase family protein [Arabidopsis thaliana] |
EMBL | CBI30191.1 | 0 | 63 | 378 | 82 | 399 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_181209.1 | 0 | 33 | 400 | 34 | 407 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002264941.1 | 0 | 80 | 378 | 11 | 309 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002326223.1 | 0 | 69 | 395 | 3 | 329 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1.4013e-45 | 84 | 381 | 9 | 311 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 9e-37 | 90 | 381 | 11 | 307 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-20 | 94 | 367 | 18 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-20 | 94 | 367 | 18 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-20 | 94 | 367 | 18 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |