Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10007136 |
Family | CE8 |
Protein Properties | Length: 358 Molecular Weight: 40206.6 Isoelectric Point: 9.6443 |
Chromosome | Chromosome/Scaffold: 128 Start: 245770 End: 246957 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 67 | 347 | 0 |
LVVDQSGHGDFTKVQSAIDSVPSNNRFWICVQLNSGIYREKVTIPVDKPYIILKGEGRRYTKIVWDDHSSIAHSATFISLADNTVVKRIAFVNSYNYPVN KNRIMPAVAALVKGDRTSFYGCGFSGVQDTLWDSEGRHYFKKCSIEGAVDFIFGGGQSIYEDCEIRVNGRGYITAQGRERPEDTGGFVFKGCSVTAGNGG PIMTYLGRPWRKYARVLFYRSNLTNVVDPKGWDSWNVNPNQVTFAEYGNYGAGADTSRRVNWVKQLPIEMWEKMTSISFIS |
Full Sequence |
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Protein Sequence Length: 358 Download |
MGVTTVMPSA SFQLWLCVTI TLLFRISQSR PISLSRPPIF PFTSTLSQRP HNYQQAKGAS 60 QLPYRTLVVD QSGHGDFTKV QSAIDSVPSN NRFWICVQLN SGIYREKVTI PVDKPYIILK 120 GEGRRYTKIV WDDHSSIAHS ATFISLADNT VVKRIAFVNS YNYPVNKNRI MPAVAALVKG 180 DRTSFYGCGF SGVQDTLWDS EGRHYFKKCS IEGAVDFIFG GGQSIYEDCE IRVNGRGYIT 240 AQGRERPEDT GGFVFKGCSV TAGNGGPIMT YLGRPWRKYA RVLFYRSNLT NVVDPKGWDS 300 WNVNPNQVTF AEYGNYGAGA DTSRRVNWVK QLPIEMWEKM TSISFISDSG WLQRQPY* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 2.0e-76 | 18 | 352 | 360 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 4.0e-81 | 67 | 353 | 291 | + putative pectinesterase | ||
PLN02480 | PLN02480 | 5.0e-83 | 65 | 352 | 298 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 3.0e-100 | 59 | 356 | 309 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 6.0e-157 | 54 | 356 | 316 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 64 | 356 | 42 | 341 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_189055.1 | 0 | 65 | 356 | 32 | 332 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263748.1 | 0 | 54 | 356 | 19 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323773.1 | 0 | 67 | 356 | 1 | 288 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 61 | 356 | 42 | 335 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2.8026e-45 | 67 | 357 | 9 | 313 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-33 | 68 | 328 | 6 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-20 | 64 | 324 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-20 | 64 | 324 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-20 | 64 | 324 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |