Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi3g17880.1 |
Family | CE8 |
Protein Properties | Length: 391 Molecular Weight: 42777.2 Isoelectric Point: 5.0155 |
Chromosome | Chromosome/Scaffold: 3 Start: 16251186 End: 16252785 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 84 | 376 | 0 |
CVDPNGCCDFTKVQDAVDAVPRSSHKRNVVWINKGIYFEKVTVPATKPNITFQGQGFDLTAIAWNDTANSSHGTFYSASVTVFAAGFVAKNISFINVAPI PRPGAVDAQAVALRIGGDQAAFWGCGFFGAQDTLHDDRGRHYFKECFIQGSIDFIFGDARSLYENCRLISIADPVPAGVRTITGAITAHARESDGDNTGY SFVNCSIGGTGRIWLGRAWRPYSRVVFAYTLMSDIIASEGWNDWNDPSRDQSVFYGEYKCTGDGANLAGRVPYSLKLSDEQALPYLNTSYIDG |
Full Sequence |
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Protein Sequence Length: 391 Download |
MSPKVISLSG LIPVVLLLFA HLNNPHTSFL RALLDLATPS LPFHLLTVGY FSNDHCLPDE 60 YNPLCDDFPP DFPPPDMAET SIFCVDPNGC CDFTKVQDAV DAVPRSSHKR NVVWINKGIY 120 FEKVTVPATK PNITFQGQGF DLTAIAWNDT ANSSHGTFYS ASVTVFAAGF VAKNISFINV 180 APIPRPGAVD AQAVALRIGG DQAAFWGCGF FGAQDTLHDD RGRHYFKECF IQGSIDFIFG 240 DARSLYENCR LISIADPVPA GVRTITGAIT AHARESDGDN TGYSFVNCSI GGTGRIWLGR 300 AWRPYSRVVF AYTLMSDIIA SEGWNDWNDP SRDQSVFYGE YKCTGDGANL AGRVPYSLKL 360 SDEQALPYLN TSYIDGDRWL KPYCDSLISA * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 9.0e-103 | 85 | 381 | 297 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 4.0e-107 | 85 | 382 | 306 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 8.0e-120 | 78 | 382 | 306 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 3.0e-132 | 92 | 382 | 297 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 0 | 20 | 385 | 376 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC83093.1 | 0 | 1 | 390 | 1 | 394 | hypothetical protein OsI_28228 [Oryza sativa Indica Group] |
GenBank | EEE68230.1 | 0 | 14 | 390 | 140 | 519 | hypothetical protein OsJ_26414 [Oryza sativa Japonica Group] |
RefSeq | XP_002267842.1 | 0 | 1 | 383 | 1 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002445213.1 | 0 | 21 | 390 | 30 | 399 | hypothetical protein SORBIDRAFT_07g006050 [Sorghum bicolor] |
RefSeq | XP_002521065.1 | 0 | 64 | 383 | 75 | 394 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 84 | 381 | 10 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 5e-40 | 84 | 387 | 6 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 5e-17 | 93 | 374 | 18 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 5e-17 | 93 | 374 | 18 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 5e-17 | 93 | 374 | 18 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |