Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.003G171400.1 |
Family | CE8 |
Protein Properties | Length: 362 Molecular Weight: 39952.9 Isoelectric Point: 8.4052 |
Chromosome | Chromosome/Scaffold: 03 Start: 44273186 End: 44276738 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 60 | 351 | 0 |
ITVDVNGSGQFRSVQDAVDAVPENNRKNVMILISPGQYIEKVVVPATKPYITFQGAGRETTFIEWHDRACDRGSNGQQLRTYQTASVTVYANYFSARNIS FKNTAPAPKPGMQGWQAVAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKQCYIEGSIDFIFGNGRSMYKECELHSIATRFGSIAAHDRKSPDEKSGFA FVNCTVTGTGPLYVGRAMGQYSRIVYSYTYFDNLVAQGGWDDWDHVNNQNKTVFFGVYKCWGPGAAAVGGVGRAKELDFGTAHRFLAKSFVN |
Full Sequence |
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Protein Sequence Length: 362 Download |
MEFSSSSCFS SFLLLFYVCF CLCLATPPLV VATANGSSCN NTNTTRHHHK WIGPIGHRLI 60 TVDVNGSGQF RSVQDAVDAV PENNRKNVMI LISPGQYIEK VVVPATKPYI TFQGAGRETT 120 FIEWHDRACD RGSNGQQLRT YQTASVTVYA NYFSARNISF KNTAPAPKPG MQGWQAVAFR 180 ISGDKAYFSG CGFYGAQDTL CDDAGRHYFK QCYIEGSIDF IFGNGRSMYK ECELHSIATR 240 FGSIAAHDRK SPDEKSGFAF VNCTVTGTGP LYVGRAMGQY SRIVYSYTYF DNLVAQGGWD 300 DWDHVNNQNK TVFFGVYKCW GPGAAAVGGV GRAKELDFGT AHRFLAKSFV NGRHWIAPWD 360 A* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 2.0e-102 | 58 | 358 | 303 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 1.0e-104 | 60 | 361 | 311 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 6.0e-111 | 56 | 356 | 303 | + pectinesterase | ||
PLN02682 | PLN02682 | 6.0e-125 | 50 | 358 | 323 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 0 | 30 | 361 | 332 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD64977.1 | 0 | 11 | 361 | 17 | 360 | pectinesterase family protein [Brassica oleracea] |
EMBL | CBI31927.1 | 0 | 16 | 361 | 7 | 349 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_199561.1 | 0 | 9 | 361 | 12 | 362 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002266321.1 | 0 | 30 | 361 | 25 | 356 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002303355.1 | 0 | 45 | 358 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 1.99993e-41 | 60 | 356 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-30 | 65 | 356 | 10 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 3e-18 | 70 | 325 | 18 | 312 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 3e-18 | 70 | 325 | 18 | 312 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 4e-18 | 70 | 236 | 18 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |