Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.018G068400.2 |
Family | CE8 |
Protein Properties | Length: 282 Molecular Weight: 31196.1 Isoelectric Point: 10.1419 |
Chromosome | Chromosome/Scaffold: 18 Start: 8727397 End: 8732210 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 84 | 261 | 0 |
IVAKNPSAGDFTTIQEAIDSLPFINLVRVIIKIRAGVYKEKVNIPPLKSFITMEGAGADNTIVQWGDTAQTPGARGQPMGTYSSATFAVNSPFFVAKNIT FKNTAPLPAPGAMGQQAVALRISADTAAFLGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNGLSLFEDCVLWAI |
Full Sequence |
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Protein Sequence Length: 282 Download |
MSNCRYNSVH LFVLTILLLN SGQTLCHTKG LRTRNPRGVQ PMMNASRVQF SEQQFMKWVT 60 FVGSLKHSVF KAAKNKIFPS YTLIVAKNPS AGDFTTIQEA IDSLPFINLV RVIIKIRAGV 120 YKEKVNIPPL KSFITMEGAG ADNTIVQWGD TAQTPGARGQ PMGTYSSATF AVNSPFFVAK 180 NITFKNTAPL PAPGAMGQQA VALRISADTA AFLGCKFLGA QDTLYDHVGR HYYKDCYIEG 240 SVDFIFGNGL SLFEDCVLWA IQMHRTRSKL RRESVMVERT H* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01095 | Pectinesterase | 6.0e-56 | 84 | 262 | 179 | + Pectinesterase. | ||
PLN02665 | PLN02665 | 7.0e-61 | 82 | 253 | 172 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 2.0e-61 | 82 | 258 | 177 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-69 | 11 | 261 | 251 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-164 | 2 | 261 | 260 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD87905.1 | 0 | 13 | 280 | 12 | 283 | pectinesterase-like [Oryza sativa Japonica Group] |
EMBL | CAN63186.1 | 0 | 5 | 280 | 3 | 278 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_197474.1 | 0 | 21 | 261 | 23 | 263 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002330522.1 | 0 | 1 | 280 | 1 | 280 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514210.1 | 0 | 9 | 280 | 8 | 282 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2e-33 | 83 | 260 | 9 | 174 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 3uw0_A | 5e-27 | 81 | 271 | 31 | 226 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1xg2_A | 5e-24 | 84 | 260 | 6 | 170 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 3e-21 | 80 | 275 | 3 | 203 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 3e-21 | 80 | 275 | 3 | 203 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |