Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10013811m |
Family | CE8 |
Protein Properties | Length: 383 Molecular Weight: 42622.2 Isoelectric Point: 8.1758 |
Chromosome | Chromosome/Scaffold: 2 Start: 10327830 End: 10329717 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 84 | 375 | 0 |
IVVDKKGRGDSVTVQGAVDMVPDSNSQRVKIFILPGIYREKVIVPRTKPYISFIGNESYAAETVISWSDKASDRDSKGGELGTYRCASVTIESDFFCATA ITFENTVTAEPGELGKQAAALRITGDKAMFYRVRVLGSQDTLNDATGSHYFYQCYIQGNVDFIFGNAKSLYQDCDIRSIAKRYGAIAAHHRSIENDDTGF SFVNCDISGSGKVFLGRAWGNFSRTVYSNCFIDDIIIPVGWNDWGDPDRQSKVLFGEYNCKGRGAERRGRVPWSKSFTQDEVKPFLGREFIY |
Full Sequence |
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Protein Sequence Length: 383 Download |
MKVKAFIPAV ILLCFGVLLG LGTSRLLQIT DEGKELRNYI SWEDLRVVED VETKRSSSIK 60 VNNNNWLISN ANANAKATNA SRVIVVDKKG RGDSVTVQGA VDMVPDSNSQ RVKIFILPGI 120 YREKVIVPRT KPYISFIGNE SYAAETVISW SDKASDRDSK GGELGTYRCA SVTIESDFFC 180 ATAITFENTV TAEPGELGKQ AAALRITGDK AMFYRVRVLG SQDTLNDATG SHYFYQCYIQ 240 GNVDFIFGNA KSLYQDCDIR SIAKRYGAIA AHHRSIENDD TGFSFVNCDI SGSGKVFLGR 300 AWGNFSRTVY SNCFIDDIII PVGWNDWGDP DRQSKVLFGE YNCKGRGAER RGRVPWSKSF 360 TQDEVKPFLG REFIYGDQWL RL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 7.0e-98 | 83 | 381 | 308 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-101 | 83 | 381 | 299 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-107 | 82 | 380 | 301 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-126 | 81 | 382 | 304 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 0 | 1 | 382 | 382 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC82420.1 | 0 | 38 | 382 | 32 | 399 | hypothetical protein OsI_26811 [Oryza sativa Indica Group] |
RefSeq | NP_200370.1 | 0 | 1 | 382 | 1 | 380 | QRT1 (QUARTET 1); pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002264297.1 | 0 | 79 | 382 | 56 | 359 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298857.1 | 0 | 79 | 382 | 15 | 318 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522727.1 | 0 | 7 | 382 | 31 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 5.60519e-45 | 84 | 381 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-35 | 85 | 381 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 4e-17 | 74 | 368 | 27 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.0000000000002 | 96 | 348 | 20 | 311 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.0000000000002 | 96 | 348 | 20 | 311 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |