Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si039580m |
Family | CE8 |
Protein Properties | Length: 329 Molecular Weight: 36265.1 Isoelectric Point: 6.497 |
Chromosome | Chromosome/Scaffold: 9 Start: 55263563 End: 55266328 |
Description | pectin methylesterase 31 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 20 | 305 | 0 |
DGVGSFASVQDAVDAVPLNNQVRTIIRIAPGLHQQPVHIPRTKSFITFRGSEIKDTVICWDNMATRIKHTQSSKVIGTGTFSSATVIVEGDDFIAENVIF KNSAPQVSGQAAAVCVTADRCAFYNCRFLGWQETLHLHGGNQFFKNCYIEGNYDFIFGDSSALLEHCHIHCKSTGYITAHGRKSSSESTGFVFFKCVITG NGEAAYMYLGRPWEPFGRVVFAETFMDHCIEPAGWHNGDKPENERTACFCEYRCSGPGSSMSERVAWCKELIGDEAIPFLVKTFID |
Full Sequence |
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Protein Sequence Length: 329 Download |
MEDRRVLVVA SPELAAFGYD GVGSFASVQD AVDAVPLNNQ VRTIIRIAPG LHQQPVHIPR 60 TKSFITFRGS EIKDTVICWD NMATRIKHTQ SSKVIGTGTF SSATVIVEGD DFIAENVIFK 120 NSAPQVSGQA AAVCVTADRC AFYNCRFLGW QETLHLHGGN QFFKNCYIEG NYDFIFGDSS 180 ALLEHCHIHC KSTGYITAHG RKSSSESTGF VFFKCVITGN GEAAYMYLGR PWEPFGRVVF 240 AETFMDHCIE PAGWHNGDKP ENERTACFCE YRCSGPGSSM SERVAWCKEL IGDEAIPFLV 300 KTFIDPDVQN PWLLHRLGTK LPVSTASP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01095 | Pectinesterase | 1.0e-84 | 20 | 307 | 307 | + Pectinesterase. | ||
PLN02432 | PLN02432 | 2.0e-87 | 21 | 313 | 295 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 9.0e-96 | 10 | 315 | 314 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 4.0e-99 | 21 | 315 | 302 | + pectinesterase family protein | ||
PLN02773 | PLN02773 | 0 | 1 | 324 | 324 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY78435.1 | 0 | 2 | 324 | 5 | 335 | hypothetical protein OsI_33526 [Oryza sativa Indica Group] |
RefSeq | NP_001064567.1 | 0 | 2 | 324 | 5 | 335 | Os10g0407000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151351.1 | 0 | 4 | 324 | 8 | 323 | pectinesterase-1 [Zea mays] |
RefSeq | XP_002464636.1 | 0 | 4 | 324 | 65 | 380 | hypothetical protein SORBIDRAFT_01g022290 [Sorghum bicolor] |
RefSeq | XP_002530008.1 | 0 | 5 | 324 | 4 | 315 | Pectinesterase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 20 | 286 | 14 | 281 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.99965e-42 | 15 | 304 | 5 | 298 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 6e-20 | 24 | 282 | 17 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 6e-20 | 24 | 282 | 17 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 6e-20 | 24 | 282 | 17 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY292729 | 287 | 20 | 306 | 0 |
GR994392 | 309 | 5 | 313 | 0 |
DY292725 | 288 | 20 | 307 | 0 |
ES794113 | 293 | 7 | 299 | 0 |
ES797575 | 316 | 7 | 322 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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