Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G212900.1 |
Family | CE8 |
Protein Properties | Length: 287 Molecular Weight: 31656.2 Isoelectric Point: 9.5836 |
Chromosome | Chromosome/Scaffold: 08 Start: 49997812 End: 49999005 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 37 | 283 | 0 |
KEGGGGEFDTITKAIKSVPSGNTKRVIISIRPRSYKEKIRIERNKPFITLLRDPQNMPNLTFDSTAKQYGTIDSATLITECSYFVGANLNLLNTAPRPDG KMVGAQVVALRVSGDRSTFYNCKIFGFQDTLCDDRGNHFFKDCHIRGTIDFIFRSGKSLYLKSGMQNTKIFVEGDLGLTVITAQVRESSSEDTGYSFVHG SIFGTTKNAYTEMGNVVNPVGWSHNLQPERAKTIYYGEYKCTGQGAN |
Full Sequence |
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Protein Sequence Length: 287 Download |
MCVSILLFAP IIVSQLIPAD KSQVNSWFNG IIKSVKKEGG GGEFDTITKA IKSVPSGNTK 60 RVIISIRPRS YKEKIRIERN KPFITLLRDP QNMPNLTFDS TAKQYGTIDS ATLITECSYF 120 VGANLNLLNT APRPDGKMVG AQVVALRVSG DRSTFYNCKI FGFQDTLCDD RGNHFFKDCH 180 IRGTIDFIFR SGKSLYLKSG MQNTKIFVEG DLGLTVITAQ VRESSSEDTG YSFVHGSIFG 240 TTKNAYTEMG NVVNPVGWSH NLQPERAKTI YYGEYKCTGQ GANPKT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 7.0e-56 | 38 | 283 | 260 | + putative pectinesterase | ||
PLN02671 | PLN02671 | 4.0e-56 | 28 | 283 | 280 | + pectinesterase | ||
PLN02304 | PLN02304 | 2.0e-56 | 43 | 283 | 263 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-66 | 35 | 283 | 270 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 5.0e-147 | 5 | 284 | 320 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI38547.1 | 0 | 1 | 283 | 6 | 328 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277202.1 | 0 | 17 | 283 | 31 | 329 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309337.1 | 0 | 4 | 284 | 17 | 333 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318197.1 | 0 | 3 | 284 | 12 | 329 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511045.1 | 0 | 1 | 284 | 14 | 331 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3e-24 | 40 | 282 | 15 | 273 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-23 | 31 | 282 | 2 | 269 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 4e-17 | 28 | 196 | 4 | 185 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 4e-17 | 28 | 196 | 4 | 185 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 4e-17 | 28 | 196 | 4 | 185 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |