Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10000936 |
Family | CE8 |
Protein Properties | Length: 305 Molecular Weight: 34251.8 Isoelectric Point: 6.8824 |
Chromosome | Chromosome/Scaffold: 1098 Start: 10653 End: 12790 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 12 | 287 | 0 |
VVVDQSGHGDFTKIQAAIDSVPQNNQYWVCIQIKAGIYKEKVTITGDKPYIILKGEGMRFTKIVWDDRYPALQSSTFISLADNIVVRDIGVVNSYNYPDG GRNRILPATAVLVNGDKTAFYGCGFFGLQDTLWDNQGRHYFKSCTIEGAVDFIFGCGQSFYENCDIRAIGAGFITAHSRNAPDDPSGFVFKGCSISGGGP SYLGRPWREYARVLFYKCELSDIVEPKGWTPWIGEKRRFAEYANFGPGADTSKRVDFEKRHLPVEMWTEMTSISYI |
Full Sequence |
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Protein Sequence Length: 305 Download |
MEAGSRRPYR VVVVDQSGHG DFTKIQAAID SVPQNNQYWV CIQIKAGIYK EKVTITGDKP 60 YIILKGEGMR FTKIVWDDRY PALQSSTFIS LADNIVVRDI GVVNSYNYPD GGRNRILPAT 120 AVLVNGDKTA FYGCGFFGLQ DTLWDNQGRH YFKSCTIEGA VDFIFGCGQS FYENCDIRAI 180 GAGFITAHSR NAPDDPSGFV FKGCSISGGG PSYLGRPWRE YARVLFYKCE LSDIVEPKGW 240 TPWIGEKRRF AEYANFGPGA DTSKRVDFEK RHLPVEMWTE MTSISYINRD GWLEQQPICF 300 SIEP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02480 | PLN02480 | 7.0e-73 | 10 | 293 | 297 | + Probable pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-81 | 1 | 293 | 304 | + pectinesterase family protein | ||
PLN02176 | PLN02176 | 2.0e-82 | 2 | 300 | 311 | + putative pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-82 | 3 | 293 | 297 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 3.0e-140 | 10 | 298 | 301 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 9 | 297 | 42 | 341 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_189055.1 | 0 | 12 | 298 | 34 | 333 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263748.1 | 0 | 9 | 297 | 29 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323773.1 | 0 | 12 | 298 | 1 | 289 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 8 | 298 | 44 | 336 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3.99931e-42 | 12 | 302 | 9 | 317 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-37 | 13 | 300 | 6 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-20 | 9 | 282 | 4 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-20 | 9 | 282 | 4 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-20 | 9 | 282 | 4 | 329 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG236231 | 191 | 113 | 297 | 0 |
JG248256 | 191 | 113 | 297 | 0 |
EE476551 | 219 | 12 | 221 | 0 |
DV984237 | 291 | 21 | 295 | 0 |
DK492309 | 206 | 12 | 210 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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