Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.003G110500.1 |
Family | CE8 |
Protein Properties | Length: 387 Molecular Weight: 41735.6 Isoelectric Point: 8.186 |
Chromosome | Chromosome/Scaffold: 03 Start: 33911539 End: 33913150 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 73 | 358 | 0 |
KVVQGGGGDFDTITKAIESVPTGNTKRVIISIGPGAYREKIKIERTKPFITLIGDPKSMANLTFDGTAKQYGTVASATLIVESDFFVAANLFIVNTAPKP DGEMEGAQGVSLRVSGDKAAFYNCKIIGFQNTLCDDKGNHFFMNCYIRGTVDFIFGNGKSLYLGTELYVEEDKRQTVITAQDRENNEQDHTGFSFVQCKI TGTAQGAYLGRAGKSSPRVVFAFTDMSNVVHPEGWSHNLTAERAQTLFYGEYKCSGLGAASAARVPYSSQLTETVALRFLTLGFID |
Full Sequence |
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Protein Sequence Length: 387 Download |
MTGKNIGKIE VGAIISTILL LARLAVSQNP AEIPADKSRV NAWFNANVKP ASARVGTIDP 60 ALGQAEAEPK VIKVVQGGGG DFDTITKAIE SVPTGNTKRV IISIGPGAYR EKIKIERTKP 120 FITLIGDPKS MANLTFDGTA KQYGTVASAT LIVESDFFVA ANLFIVNTAP KPDGEMEGAQ 180 GVSLRVSGDK AAFYNCKIIG FQNTLCDDKG NHFFMNCYIR GTVDFIFGNG KSLYLGTELY 240 VEEDKRQTVI TAQDRENNEQ DHTGFSFVQC KITGTAQGAY LGRAGKSSPR VVFAFTDMSN 300 VVHPEGWSHN LTAERAQTLF YGEYKCSGLG AASAARVPYS SQLTETVALR FLTLGFIDGS 360 RWLLPPPNLK MDKTIVLLGT HAQLYE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 1.0e-78 | 74 | 365 | 300 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 1.0e-82 | 70 | 363 | 303 | + pectinesterase | ||
PLN02432 | PLN02432 | 6.0e-84 | 71 | 363 | 294 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 3.0e-97 | 78 | 365 | 296 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 13 | 369 | 357 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309337.1 | 0 | 1 | 368 | 1 | 368 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318197.1 | 0 | 15 | 368 | 11 | 364 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321778.1 | 0 | 7 | 368 | 4 | 362 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333446.1 | 0 | 15 | 368 | 12 | 365 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511045.1 | 0 | 6 | 368 | 8 | 366 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 4e-39 | 69 | 363 | 7 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4e-33 | 74 | 363 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 4e-18 | 71 | 239 | 7 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 4e-18 | 71 | 239 | 7 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 4e-18 | 71 | 239 | 7 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |