Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00040591m |
Family | CE8 |
Protein Properties | Length: 311 Molecular Weight: 34083.9 Isoelectric Point: 8.4519 |
Chromosome | Chromosome/Scaffold: 056064 Start: 776 End: 2852 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 60 | 304 | 0 |
VVDKNPAFGDFTTIQAAIDSLPAINLVRVVIRVNAGTYTEKVTISPMRAFITLEGAGADSTIVQWGDTADSPTGPKGRPLGTFNSATFAVNAQYFLARNI TFKNTSPVPKPGATGKQAVALRVSADNVAFVGCKFLGAQDTLYDHTGRHYYKECYIEGSVDFIFGNALSLYEDCHVHAIARDYGALTAQNRQSTLEETGF SFVNCRVTGSGALYLGRAWGTFSRVVFAYTYMDNIIIPRGWYNWG |
Full Sequence |
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Protein Sequence Length: 311 Download |
MATPRARFLA CIAVAAVALL APACGMIERQ FMEWVRYMGG LRHSTFQHAL ARAFPSYSLV 60 VDKNPAFGDF TTIQAAIDSL PAINLVRVVI RVNAGTYTEK VTISPMRAFI TLEGAGADST 120 IVQWGDTADS PTGPKGRPLG TFNSATFAVN AQYFLARNIT FKNTSPVPKP GATGKQAVAL 180 RVSADNVAFV GCKFLGAQDT LYDHTGRHYY KECYIEGSVD FIFGNALSLY EDCHVHAIAR 240 DYGALTAQNR QSTLEETGFS FVNCRVTGSG ALYLGRAWGT FSRVVFAYTY MDNIIIPRGW 300 YNWGDPNREM C |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 1.0e-91 | 68 | 309 | 242 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-92 | 41 | 309 | 271 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 6.0e-93 | 59 | 309 | 259 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-99 | 59 | 303 | 245 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 0 | 26 | 310 | 285 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN26093.1 | 0 | 1 | 310 | 1 | 351 | unknown [Zea mays] |
GenBank | ACR36293.1 | 0 | 1 | 310 | 1 | 343 | unknown [Zea mays] |
DDBJ | BAD87905.1 | 0 | 27 | 310 | 53 | 336 | pectinesterase-like [Oryza sativa Japonica Group] |
RefSeq | NP_001044216.1 | 0 | 27 | 310 | 53 | 336 | Os01g0743200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002458469.1 | 0 | 1 | 310 | 1 | 354 | hypothetical protein SORBIDRAFT_03g034250 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 5.04467e-44 | 68 | 303 | 17 | 252 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 7e-36 | 68 | 303 | 13 | 248 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 7e-29 | 57 | 300 | 31 | 303 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 5e-17 | 56 | 300 | 3 | 279 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 5e-17 | 56 | 300 | 3 | 279 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |