Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.013G154000.1 |
Family | CE8 |
Protein Properties | Length: 361 Molecular Weight: 40211.8 Isoelectric Point: 8.5788 |
Chromosome | Chromosome/Scaffold: 13 Start: 42304350 End: 42306172 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 62 | 354 | 0 |
IVVDKNGGGDSITVQGAVNMVPEYNKQRVKIYILPGIYREKVVVPRFKPYISFVGNEGQMVNTIISWHDKASDRNSNGGSLGTYRSASVTIGSDYFCATD ITFENTVIGAPGEPGRQAVALRIYGDKAMFYKVKIVGGQDTLLDETGSHYFYHSVIQGSVDFICGKSRSLYQECLIQSTAKKIGAIAAHHRDLPDDNTGF SFVSCIITGSGKVYLGRAWGNYSRTIYSNCYFDNVIIPAGWSDWNDPLRHKTVEFGEFQSWGTGSDTSGRVPWSKKLTYGEAKPFMDIKFIDG |
Full Sequence |
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Protein Sequence Length: 361 Download |
MDYCCVLVMV IMTVFASCFR VGLSKPNELY VKNFISWDDM KVDGHKIRLN TSTVCHNQSR 60 VIVVDKNGGG DSITVQGAVN MVPEYNKQRV KIYILPGIYR EKVVVPRFKP YISFVGNEGQ 120 MVNTIISWHD KASDRNSNGG SLGTYRSASV TIGSDYFCAT DITFENTVIG APGEPGRQAV 180 ALRIYGDKAM FYKVKIVGGQ DTLLDETGSH YFYHSVIQGS VDFICGKSRS LYQECLIQST 240 AKKIGAIAAH HRDLPDDNTG FSFVSCIITG SGKVYLGRAW GNYSRTIYSN CYFDNVIIPA 300 GWSDWNDPLR HKTVEFGEFQ SWGTGSDTSG RVPWSKKLTY GEAKPFMDIK FIDGKQWLKL 360 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 3.0e-94 | 60 | 358 | 305 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 3.0e-98 | 51 | 359 | 309 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 4.0e-106 | 60 | 358 | 301 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 4.0e-119 | 59 | 360 | 304 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 0 | 10 | 360 | 351 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEE67559.1 | 0 | 34 | 360 | 33 | 398 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
RefSeq | NP_200370.1 | 0 | 6 | 360 | 12 | 380 | QRT1 (QUARTET 1); pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002264297.1 | 0 | 34 | 360 | 34 | 359 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298857.1 | 0 | 57 | 360 | 15 | 318 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522727.1 | 0 | 9 | 360 | 33 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 51 | 359 | 2 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 6e-40 | 63 | 359 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.0000000001 | 53 | 237 | 25 | 217 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.000000002 | 74 | 352 | 20 | 334 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.000000002 | 74 | 352 | 20 | 334 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |