Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma02g13820.1 |
Family | CE8 |
Protein Properties | Length: 370 Molecular Weight: 40185.9 Isoelectric Point: 8.6481 |
Chromosome | Chromosome/Scaffold: 02 Start: 12135439 End: 12137499 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 71 | 355 | 0 |
VKVMQDGSGEFKTITDAINSIPSGNTKRVIVYIGAGNYNEKIKIEKTKPFITLYGVPEKMPNLTFGGTALKYGTVDSATLIVESDYFVAANIIISNSAPR PDGKIQGGQAVALRISGDKAAFYNCKFFGFQDTICDDRNRHFFKDCLIQGTMDYIFGSGKSLYLSTELRTLGDTGITVIVAQARKSPTEDNAYSFVHCDV TGTGNGTFLGRAWMPHPRVVFAYSTMSAVVKKEGWSNNNHPEHDKNVRFGEYQNTGPGADPKGRAAITTQLNEMQVKPYITLGMI |
Full Sequence |
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Protein Sequence Length: 370 Download |
MASKTICTTI QVTLIVAFLT TQVVFSDDTV PIPAHKAQLG TWFSTNVGPL DQRKSTMDPA 60 LVAAEEGAKV VKVMQDGSGE FKTITDAINS IPSGNTKRVI VYIGAGNYNE KIKIEKTKPF 120 ITLYGVPEKM PNLTFGGTAL KYGTVDSATL IVESDYFVAA NIIISNSAPR PDGKIQGGQA 180 VALRISGDKA AFYNCKFFGF QDTICDDRNR HFFKDCLIQG TMDYIFGSGK SLYLSTELRT 240 LGDTGITVIV AQARKSPTED NAYSFVHCDV TGTGNGTFLG RAWMPHPRVV FAYSTMSAVV 300 KKEGWSNNNH PEHDKNVRFG EYQNTGPGAD PKGRAAITTQ LNEMQVKPYI TLGMIEGSKW 360 LLPPPTPKV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 4.0e-76 | 75 | 361 | 299 | + pectinesterase | ||
PLN02432 | PLN02432 | 5.0e-78 | 75 | 361 | 287 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 1.0e-82 | 76 | 363 | 296 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 8.0e-93 | 77 | 363 | 294 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 8 | 365 | 358 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU14235.1 | 0 | 1 | 246 | 1 | 246 | unknown [Glycine max] |
RefSeq | XP_002309337.1 | 0 | 4 | 365 | 5 | 367 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318197.1 | 0 | 10 | 365 | 7 | 363 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333446.1 | 0 | 5 | 365 | 3 | 364 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511043.1 | 0 | 3 | 365 | 2 | 364 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3e-34 | 71 | 361 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-34 | 73 | 361 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 2e-19 | 63 | 238 | 1 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 2e-19 | 63 | 238 | 1 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 2e-19 | 63 | 238 | 1 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |