Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si024215m |
Family | CE8 |
Protein Properties | Length: 426 Molecular Weight: 45159.3 Isoelectric Point: 9.3732 |
Chromosome | Chromosome/Scaffold: 3 Start: 42742906 End: 42744290 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 117 | 410 | 0 |
YVVSADGKGKFRTINDAIKAVPENNKKRVILDIRPGTYKEKVLVPYTKHFITFLGDPKQPPVIMWDDTAATRGKDGLPVGTVGSATVAVESDYFLASGIV FRNHAPMAAPGAKGGQAVALRVFGTKAAFYNCTIDGGQDTLYDHKGLHYFKGCLIKGSVDFIFGFGRSLYEDCSIVSVTKQVAVLTAQQRTRSIADAIES GFSFLRCRVSGDGQIYLGRAWGDSSRVVYAYTDMGKEVVPVGWDGWNIQTPERSGIYYGEYRCSGPGALAHKRIGWSLILNDDQAKPFTGTHFV |
Full Sequence |
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Protein Sequence Length: 426 Download |
MAVLAPLLLA SLVSVATSSP PPSKDVQQAS FAVNTPVKKP SHGGGQQASF VIGGDDGASS 60 KVPPGSGAAG SFGEFIAENV QSYNVNKQIY AAKVKNGTGG KAVDAELSAA EAGAVRYVVS 120 ADGKGKFRTI NDAIKAVPEN NKKRVILDIR PGTYKEKVLV PYTKHFITFL GDPKQPPVIM 180 WDDTAATRGK DGLPVGTVGS ATVAVESDYF LASGIVFRNH APMAAPGAKG GQAVALRVFG 240 TKAAFYNCTI DGGQDTLYDH KGLHYFKGCL IKGSVDFIFG FGRSLYEDCS IVSVTKQVAV 300 LTAQQRTRSI ADAIESGFSF LRCRVSGDGQ IYLGRAWGDS SRVVYAYTDM GKEVVPVGWD 360 GWNIQTPERS GIYYGEYRCS GPGALAHKRI GWSLILNDDQ AKPFTGTHFV YGDSWILPPP 420 KLAGK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 2.0e-84 | 119 | 418 | 308 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 4.0e-93 | 112 | 418 | 307 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 3.0e-94 | 118 | 416 | 302 | + pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-116 | 123 | 418 | 296 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 3.0e-119 | 58 | 422 | 368 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY81792.1 | 0 | 63 | 421 | 37 | 399 | hypothetical protein OsI_36964 [Oryza sativa Indica Group] |
GenBank | EEC69509.1 | 0 | 39 | 421 | 32 | 413 | hypothetical protein OsI_38743 [Oryza sativa Indica Group] |
RefSeq | NP_001067039.1 | 0 | 71 | 421 | 68 | 412 | Os12g0563700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001068464.1 | 0 | 63 | 420 | 37 | 398 | Os11g0683700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002443368.1 | 0 | 53 | 423 | 59 | 432 | hypothetical protein SORBIDRAFT_08g018360 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 118 | 416 | 10 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4e-39 | 118 | 416 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 3e-20 | 109 | 293 | 1 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 3e-20 | 109 | 293 | 1 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 3e-20 | 109 | 293 | 1 | 192 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |