| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si000119m |
| Family | GH2 |
| Protein Properties | Length: 1117 Molecular Weight: 125981 Isoelectric Point: 5.9392 |
| Chromosome | Chromosome/Scaffold: 5 Start: 46448261 End: 46457402 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH2 | 87 | 983 | 0 |
| YTKSLSGYWKFLLAPSAESVPEKFFDAHFDDSNWEALPVPSNWQMHGFDRPIYTNTTYPFPINPPFVSTDNPTGCYRTVFHIPKEWKGRRILLHFEAVDS AFFAWVNGVPIGYSQDSRLPAEFEVTDCCHPCDSDKENVLAVQVMRWSDGSYLEDQDHWWLSGIHRDVLLLSKPQIFITDYFFKATMDENFSLADIEVEV EIDSHKQDREHVSTLSIEATLYDNSGPSISLDGDLSFANVVNLKPKPKTSRGPCLGFHGYVLGGKIENPKLWSSEHPNLYTLVVLLKDANGKLIECESCQ VGIRNVVRAHKQMLVNGCPVVLRGVNRHEHHPRLGKTNIEACMIKDLILMRQNNINAVRNSHYPQHSRWYELCDIFGLYVIDEANIETHGFDENSHFKHP TLEPIWANAMLDRVVGMVERDKNHACIIVWSLGNESSYGPNHASMSGWIRERDPTRLLHYEGGGSRTSSTDIVCPMYMRVWDIIKIAKDPSETRPLILCE YSHAMGNSNGNIDAYWMAIDNTFGLQGGFIWDWVDQGLLKEDSDGSKFWAYGGDFGDTPNDLNFCLNGIVWPDRTIHPAVHEVKYLYQPIKISSADNMLK IENGHFFDTTEALDFSWVLQGDGCILGSGSLNVPTLAPQTSHLINMESSPWFALWSTCAVKEVFLSVNVKQRYHTRWAKDGHLLASAQLCLPQKNGFVPH AVAFSSSPLVCERTGDSVIISKNDAWKIKVNSQLGTIDSWKVSNVELMSKGIFPCFWRAPTDNDKGGFYTKPYVSQWREASLDNVSFYSSQFSVKELPDN TVELSTVYYGLPGNLPKPDDAALSQAPESTLFQVNMLCRIYESGDVVLEYEVNPKADLPPLPRVGVVFNAEKSLSHVMWYGRGPFECYPDRKAAAHV | |||
| Full Sequence |
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| Protein Sequence Length: 1117 Download |
| MALAYASAVV PPSNRSYKAW EDPSFFKWRK RDAHVPLRSQ DTLEGALRYW HERRNVNYLN 60 ADTAVWNDDA VRGALESAAL WSKGLPYTKS LSGYWKFLLA PSAESVPEKF FDAHFDDSNW 120 EALPVPSNWQ MHGFDRPIYT NTTYPFPINP PFVSTDNPTG CYRTVFHIPK EWKGRRILLH 180 FEAVDSAFFA WVNGVPIGYS QDSRLPAEFE VTDCCHPCDS DKENVLAVQV MRWSDGSYLE 240 DQDHWWLSGI HRDVLLLSKP QIFITDYFFK ATMDENFSLA DIEVEVEIDS HKQDREHVST 300 LSIEATLYDN SGPSISLDGD LSFANVVNLK PKPKTSRGPC LGFHGYVLGG KIENPKLWSS 360 EHPNLYTLVV LLKDANGKLI ECESCQVGIR NVVRAHKQML VNGCPVVLRG VNRHEHHPRL 420 GKTNIEACMI KDLILMRQNN INAVRNSHYP QHSRWYELCD IFGLYVIDEA NIETHGFDEN 480 SHFKHPTLEP IWANAMLDRV VGMVERDKNH ACIIVWSLGN ESSYGPNHAS MSGWIRERDP 540 TRLLHYEGGG SRTSSTDIVC PMYMRVWDII KIAKDPSETR PLILCEYSHA MGNSNGNIDA 600 YWMAIDNTFG LQGGFIWDWV DQGLLKEDSD GSKFWAYGGD FGDTPNDLNF CLNGIVWPDR 660 TIHPAVHEVK YLYQPIKISS ADNMLKIENG HFFDTTEALD FSWVLQGDGC ILGSGSLNVP 720 TLAPQTSHLI NMESSPWFAL WSTCAVKEVF LSVNVKQRYH TRWAKDGHLL ASAQLCLPQK 780 NGFVPHAVAF SSSPLVCERT GDSVIISKND AWKIKVNSQL GTIDSWKVSN VELMSKGIFP 840 CFWRAPTDND KGGFYTKPYV SQWREASLDN VSFYSSQFSV KELPDNTVEL STVYYGLPGN 900 LPKPDDAALS QAPESTLFQV NMLCRIYESG DVVLEYEVNP KADLPPLPRV GVVFNAEKSL 960 SHVMWYGRGP FECYPDRKAA AHVGVYESSV EDLHVPYIVP GECGGRADVR WVALRNADGL 1020 GLQASVHGES PPMQMSASYY GTEELDRATH VHKLVKGDDI EVHLDHRHMG LGGDDSWTPC 1080 VHEQYLLPPT RYAFSMRLCP LLPSSSCHDI YKSQLP* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart01038 | Bgal_small_N | 5.0e-85 | 808 | 1098 | 292 | + Beta galactosidase small chain. This domain comprises the small chain of dimeric beta-galactosidases EC:3.2.1.23. This domain is also found in single chain beta-galactosidase. | ||
| pfam02836 | Glyco_hydro_2_C | 1.0e-111 | 397 | 678 | 292 | + Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| COG3250 | LacZ | 6.0e-155 | 89 | 981 | 902 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| PRK09525 | lacZ | 0 | 20 | 1100 | 1104 | + beta-D-galactosidase; Reviewed | ||
| PRK10340 | ebgA | 0 | 74 | 1085 | 1025 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC72176.1 | 0 | 1 | 1116 | 1 | 1031 | hypothetical protein OsI_05227 [Oryza sativa Indica Group] |
| RefSeq | NP_001045421.1 | 0 | 1 | 1116 | 1 | 1116 | Os01g0952600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_680128.1 | 0 | 3 | 1116 | 2 | 1106 | glycoside hydrolase family 2 protein [Arabidopsis thaliana] |
| RefSeq | XP_002266400.1 | 0 | 12 | 1115 | 11 | 1112 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002266434.1 | 0 | 12 | 1115 | 11 | 1113 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1f4h_D | 0 | 89 | 1099 | 50 | 1019 | A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained Monomer- Orthorhombic) |
| PDB | 1f4h_C | 0 | 89 | 1099 | 50 | 1019 | A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained Monomer- Orthorhombic) |
| PDB | 1f4h_B | 0 | 89 | 1099 | 50 | 1019 | A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained Monomer- Orthorhombic) |
| PDB | 1f4h_A | 0 | 89 | 1099 | 50 | 1019 | A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained Monomer- Orthorhombic) |
| PDB | 1f4a_D | 0 | 89 | 1099 | 50 | 1019 | A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained Monomer- Orthorhombic) |
| Metabolic Pathways | |||
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| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FL727074 | 272 | 470 | 741 | 0 |
| FL769129 | 261 | 470 | 730 | 0 |
| FL823757 | 261 | 463 | 723 | 0 |
| HO804274 | 391 | 130 | 515 | 0 |
| HO804274 | 47 | 504 | 549 | 0.0000002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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