| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10010080m |
| Family | GH2 |
| Protein Properties | Length: 1108 Molecular Weight: 125592 Isoelectric Point: 5.5453 |
| Chromosome | Chromosome/Scaffold: 16 Start: 693944 End: 702138 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH2 | 87 | 973 | 0 |
| VKSLSGFWKFFLAPSPANVPDKFYDAAFPDSDWKSLPVPSNWQCHGFDRPIYTNIVYPFPNDPPHVPEDNPTGCYRTYFQIPKEWKDRRILLHFEAVDSA FFAWINGKPVGYSQDSRLPAEFEISDYCYPWDSGKQNVLAVQVFRWSDGSYLEDQDHWWLSGLHRDVLLLAKPKVFIDDYFFKSKLADDFSYADIQVEVK IDNMLETSKDLVLSNFIIEAAVFDTKSWYNSGGFSYELSPKVASLKLNPSPSSSLGFHGYLLEGKLDSPNLWSAEQPNVYILVITLKDKSGKLLDSESSI VGVRQVSKAFKQLLVNGHPVMIKGVNRHEHHPRVGKTNIEACMIKDLIMMKEYNINAVRNSHYPQHPRWYELCDLFGMYMIDEANIETHGFDLSGHLKHP TKEPSWAAAMLDRVVGMVERDKNHACIISWSLGNEANYGPNHSAMAGWIREKDPSRLVHYEGGGSRTDSTDIVCPMYMRVWDIVKIALDKNESRPLILCE YSHAMGNSNGNIDEYWEAIDNTFGLQGGFIWDWVDQGLLKLGSDGIKHWAYGGDFGDQPNDLNFCLNGLIWPDRTPHPALHEVKHCYQPIKVSLTDGTMR VANAYFFHTTEELEFSWTIHGDGVELGSGTLSIPVIKPQNIYDMEWKSGPWFSLWNDSNTGESFLTITAKLLNPTRSLQAGHLLSSTQIPLPAKRQIIPQ AIKITDAIINCETVGDFIKISQQDSWELMIDVRKGAIEGWKMQGVLLTKEAILPCFWRAPTDNDKGGDDSSYFSRWKAAHMDNVQFLVQSCSVKSITDKS VEIEFIYLGSSASDSSKSDALFNVSVTYMIYGSGDIITNWYVVPNSDLPPLPRVGIEFHIEKTLDRVEWYGRGPFECYPDRKSAAHV | |||
| Full Sequence |
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| Protein Sequence Length: 1108 Download |
| MASLATQMIL PSENGYRVWE DQTLFKWRKR DPHVTLRCHD SVEGSLRYWY QRTNVDLTVS 60 KSAVWNDDAV QGALDSAAFW VEGLPFVKSL SGFWKFFLAP SPANVPDKFY DAAFPDSDWK 120 SLPVPSNWQC HGFDRPIYTN IVYPFPNDPP HVPEDNPTGC YRTYFQIPKE WKDRRILLHF 180 EAVDSAFFAW INGKPVGYSQ DSRLPAEFEI SDYCYPWDSG KQNVLAVQVF RWSDGSYLED 240 QDHWWLSGLH RDVLLLAKPK VFIDDYFFKS KLADDFSYAD IQVEVKIDNM LETSKDLVLS 300 NFIIEAAVFD TKSWYNSGGF SYELSPKVAS LKLNPSPSSS LGFHGYLLEG KLDSPNLWSA 360 EQPNVYILVI TLKDKSGKLL DSESSIVGVR QVSKAFKQLL VNGHPVMIKG VNRHEHHPRV 420 GKTNIEACMI KDLIMMKEYN INAVRNSHYP QHPRWYELCD LFGMYMIDEA NIETHGFDLS 480 GHLKHPTKEP SWAAAMLDRV VGMVERDKNH ACIISWSLGN EANYGPNHSA MAGWIREKDP 540 SRLVHYEGGG SRTDSTDIVC PMYMRVWDIV KIALDKNESR PLILCEYSHA MGNSNGNIDE 600 YWEAIDNTFG LQGGFIWDWV DQGLLKLGSD GIKHWAYGGD FGDQPNDLNF CLNGLIWPDR 660 TPHPALHEVK HCYQPIKVSL TDGTMRVANA YFFHTTEELE FSWTIHGDGV ELGSGTLSIP 720 VIKPQNIYDM EWKSGPWFSL WNDSNTGESF LTITAKLLNP TRSLQAGHLL SSTQIPLPAK 780 RQIIPQAIKI TDAIINCETV GDFIKISQQD SWELMIDVRK GAIEGWKMQG VLLTKEAILP 840 CFWRAPTDND KGGDDSSYFS RWKAAHMDNV QFLVQSCSVK SITDKSVEIE FIYLGSSASD 900 SSKSDALFNV SVTYMIYGSG DIITNWYVVP NSDLPPLPRV GIEFHIEKTL DRVEWYGRGP 960 FECYPDRKSA AHVAIYEDNV GDMHVPYIVP GECGGRTDVR WVTFRNKDGV GIYASTYGSS 1020 SPMQMNASYY TTSELHRATH EEDLIKGQNI EVHLDHKHMG VGGDDSWTPC VHEKYLIPPE 1080 PYSFSIRLCP ITAATSVLDI YKNQLPC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart01038 | Bgal_small_N | 3.0e-96 | 810 | 1088 | 280 | + Beta galactosidase small chain. This domain comprises the small chain of dimeric beta-galactosidases EC:3.2.1.23. This domain is also found in single chain beta-galactosidase. | ||
| pfam02836 | Glyco_hydro_2_C | 1.0e-110 | 397 | 677 | 291 | + Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| COG3250 | LacZ | 2.0e-141 | 87 | 734 | 659 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| PRK09525 | lacZ | 0 | 85 | 1090 | 1054 | + beta-D-galactosidase; Reviewed | ||
| PRK10340 | ebgA | 0 | 88 | 1094 | 1011 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB77564.1 | 0 | 1 | 1107 | 1 | 1075 | beta Galactosidase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001030858.1 | 0 | 1 | 1107 | 1 | 1108 | glycoside hydrolase family 2 protein [Arabidopsis thaliana] |
| RefSeq | NP_680128.1 | 0 | 1 | 1107 | 1 | 1107 | glycoside hydrolase family 2 protein [Arabidopsis thaliana] |
| RefSeq | XP_002303929.1 | 0 | 1 | 1105 | 1 | 1111 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002513059.1 | 0 | 1 | 1102 | 1 | 1105 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3t2q_D | 0 | 87 | 1089 | 80 | 1050 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3t2q_C | 0 | 87 | 1089 | 80 | 1050 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3t2q_B | 0 | 87 | 1089 | 80 | 1050 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3t2q_A | 0 | 87 | 1089 | 80 | 1050 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3t2p_D | 0 | 87 | 1089 | 80 | 1050 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO804274 | 385 | 129 | 510 | 0 |
| DK497367 | 260 | 1 | 260 | 0 |
| DK502071 | 256 | 1 | 256 | 0 |
| DK499562 | 275 | 244 | 518 | 0 |
| HO804274 | 47 | 504 | 549 | 0.0000002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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