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Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra002247 |
Family | AA5 |
Protein Properties | Length: 565 Molecular Weight: 61658 Isoelectric Point: 9.7219 |
Chromosome | Chromosome/Scaffold: 10 Start: 10681960 End: 10684049 |
Description | glyoxal oxidase-related protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA5 | 262 | 563 | 0 |
IKEFPQLPGGSRNYPGSGSSALLPIHLYMKNPKVIPAEVLVCGGTRHDAYYRASKKVFEPALQDCARIRINSAKPRWKIETMPTPRVMSDTVILPNGDIL LVNGGKRGCSGWGYGKDPNFAPTLYKPRAARGKRFRELAATNIPRMYHSVAIAIPDGKVLVAGSNTNDGYKYNVEFPTELRVEKFSPPYLDPALATLRPK IATSPKQIRYGQNFNVKVNLNQKDVTKQSLKLTMLAPSFTTHSISMNMRMLLLGVGGVNPAGGASFEIQTVAPPSGNVAPPGYYLLFAVYKGVPSTGEWI QI |
Full Sequence |
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Protein Sequence Length: 565 Download |
MRASTRVIWT VSVLMLAAVS DAIFPLPFLP FLPGFNNVHD HDDVEVAKPV VTGGKAGGKR 60 RSGGALEAQT NWPGKWELFL ENSGVSAMHA GLMPLINQVQ FYDATIWRIS KIKLPPGVPC 120 HVVNAKTNKI DCWAHSVLID VNNGAIKPLS LATDTWCSSG GLTVNGTMVS TGGYGGGANT 180 ARYLAACPNC QWHEYPQALA AKRWYSTQAT LPDGKFFIIG GRDAMNYEYI PEEGQNNKKI 240 YDSLLLKQTD DPEENNLYPF VIKEFPQLPG GSRNYPGSGS SALLPIHLYM KNPKVIPAEV 300 LVCGGTRHDA YYRASKKVFE PALQDCARIR INSAKPRWKI ETMPTPRVMS DTVILPNGDI 360 LLVNGGKRGC SGWGYGKDPN FAPTLYKPRA ARGKRFRELA ATNIPRMYHS VAIAIPDGKV 420 LVAGSNTNDG YKYNVEFPTE LRVEKFSPPY LDPALATLRP KIATSPKQIR YGQNFNVKVN 480 LNQKDVTKQS LKLTMLAPSF TTHSISMNMR MLLLGVGGVN PAGGASFEIQ TVAPPSGNVA 540 PPGYYLLFAV YKGVPSTGEW IQIV* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam09118 | DUF1929 | 2.0e-27 | 459 | 563 | 106 | + Domain of unknown function (DUF1929). Members of this family adopt a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase. | ||
cd02851 | E_set_GO_C | 2.0e-30 | 459 | 563 | 106 | + C-terminal Early set domain associated with the catalytic domain of galactose oxidase. E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. | ||
pfam07250 | Glyoxal_oxid_N | 3.0e-93 | 88 | 305 | 248 | + Glyoxal oxidase N-terminus. This family represents the N-terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyzes the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL84955.1 | 0 | 1 | 564 | 1 | 594 | AT5g19580/T20D1_100 [Arabidopsis thaliana] |
RefSeq | NP_176897.1 | 0 | 1 | 564 | 1 | 615 | glyoxal oxidase-related [Arabidopsis thaliana] |
RefSeq | NP_197459.1 | 0 | 1 | 564 | 1 | 594 | glyoxal oxidase-related [Arabidopsis thaliana] |
RefSeq | XP_002331167.1 | 0 | 74 | 563 | 89 | 608 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514260.1 | 0 | 72 | 563 | 94 | 612 | Galactose oxidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2eib_A | 0.00000000000006 | 154 | 564 | 225 | 638 | A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant |
PDB | 2eid_A | 0.00000000000007 | 154 | 564 | 225 | 638 | A Chain A, Galactose Oxidase W290g Mutant |
PDB | 1k3i_A | 0.0000000000001 | 154 | 564 | 242 | 655 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
PDB | 2eic_A | 0.0000000000001 | 154 | 564 | 225 | 638 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |
PDB | 2vz3_A | 0.0000000000001 | 154 | 564 | 225 | 638 | A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f |