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Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb09g028310.1 |
Family | AA5 |
Protein Properties | Length: 621 Molecular Weight: 67377.4 Isoelectric Point: 5.5587 |
Chromosome | Chromosome/Scaffold: 9 Start: 57225510 End: 57227469 |
Description | glyoxal oxidase-related protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA5 | 73 | 619 | 0 |
RVPAGGPPSKAAQDTVALPADKGGGAVGSWTIVSENSGVSAMHMVVMRHGKAVMFDTSTTGRSLMRLPQDNCRIDPRAKEEGTMDCWAHSVEFDYNTGGL RPLKILTDTWCSSGALDPDGNLVQTGGYFEGEKVVRTLSPCDTCDWLEQPNSFAEGRWYATQVALPDGRFIMFGGRRAFSYEYVPWPGKSNDKAVRLPFF RETTDDVENNLYPFVNLLPSGNLFLFANDRSVIFDAKSSKIVRELPKLDGGSRNYPGSAMSTLLPLDLRNVTGDPEPVVVICGGAPKKAFRKGENNTFLP ALRDCARINLARPDAQWESEDMPVGRVMGDMLILPTGDLLLLSGAAKGCAGWGFGRQPVLTPILYSPRKAEGPRFRALASSTIARMYHSSSAVLPDATVL VAGGNANAAYNFSDVDFPTEVRVERFTPPYLSDDGAADNRAVIDLASLPVDGMRYGAPFAFRFSVTSEPAVVEADVKVTLYAPPFTTHGCSMNQRLLILH FTSYVQEGRSYRVCVDGPGKPELAPRGYYLLFVVAKGVPSVGVWVKV |
Full Sequence |
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Protein Sequence Length: 621 Download |
MGSPPRSAVI AVAFLLLASS GEAFFDIFNF FHPHSETDYF QNAFEGTPEQ TVPTQTEQEE 60 RGAAPALATG LTRVPAGGPP SKAAQDTVAL PADKGGGAVG SWTIVSENSG VSAMHMVVMR 120 HGKAVMFDTS TTGRSLMRLP QDNCRIDPRA KEEGTMDCWA HSVEFDYNTG GLRPLKILTD 180 TWCSSGALDP DGNLVQTGGY FEGEKVVRTL SPCDTCDWLE QPNSFAEGRW YATQVALPDG 240 RFIMFGGRRA FSYEYVPWPG KSNDKAVRLP FFRETTDDVE NNLYPFVNLL PSGNLFLFAN 300 DRSVIFDAKS SKIVRELPKL DGGSRNYPGS AMSTLLPLDL RNVTGDPEPV VVICGGAPKK 360 AFRKGENNTF LPALRDCARI NLARPDAQWE SEDMPVGRVM GDMLILPTGD LLLLSGAAKG 420 CAGWGFGRQP VLTPILYSPR KAEGPRFRAL ASSTIARMYH SSSAVLPDAT VLVAGGNANA 480 AYNFSDVDFP TEVRVERFTP PYLSDDGAAD NRAVIDLASL PVDGMRYGAP FAFRFSVTSE 540 PAVVEADVKV TLYAPPFTTH GCSMNQRLLI LHFTSYVQEG RSYRVCVDGP GKPELAPRGY 600 YLLFVVAKGV PSVGVWVKVW * 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam09118 | DUF1929 | 8.0e-23 | 512 | 619 | 109 | + Domain of unknown function (DUF1929). Members of this family adopt a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase. | ||
cd02851 | E_set_GO_C | 3.0e-24 | 511 | 619 | 110 | + C-terminal Early set domain associated with the catalytic domain of galactose oxidase. E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. | ||
pfam07250 | Glyoxal_oxid_N | 7.0e-119 | 114 | 356 | 246 | + Glyoxal oxidase N-terminus. This family represents the N-terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyzes the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACR33858.1 | 0 | 26 | 619 | 28 | 616 | unknown [Zea mays] |
GenBank | EAY98991.1 | 0 | 1 | 619 | 1 | 620 | hypothetical protein OsI_20949 [Oryza sativa Indica Group] |
RefSeq | NP_001056298.1 | 0 | 20 | 619 | 23 | 621 | Os05g0559000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148082.1 | 0 | 1 | 619 | 1 | 618 | glyoxal oxidase [Zea mays] |
RefSeq | XP_002440240.1 | 0 | 1 | 620 | 1 | 620 | hypothetical protein SORBIDRAFT_09g028310 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1k3i_A | 0.000000000007 | 180 | 619 | 242 | 654 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
PDB | 2vz3_A | 0.000000000009 | 180 | 619 | 225 | 637 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
PDB | 2vz1_A | 0.000000000009 | 180 | 619 | 225 | 637 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
PDB | 2jkx_A | 0.000000000009 | 180 | 619 | 225 | 637 | A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase |
PDB | 2eie_A | 0.000000000009 | 180 | 619 | 225 | 637 | A Chain A, Crystal Structure Of Galactose Oxidase Complexed With Azide |