| Basic Information | |
|---|---|
| Species | Brachypodium distachyon |
| Cazyme ID | Bradi1g48230.1 |
| Family | CBM57 |
| Protein Properties | Length: 620 Molecular Weight: 67836.2 Isoelectric Point: 7.0921 |
| Chromosome | Chromosome/Scaffold: 1 Start: 46846276 End: 46856378 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM57 | 372 | 541 | 1.4e-28 |
| FAVNCGGKQKTYQDSLPITFSDDTSNLGAAGIHVDTDKQWVVSHVGSDPVVSESPGIVNTNQGFLGVDMPELYQTARTSRSALSYYVVGLSNGKYTVQLF FAEIVIDSQLNHGPGRRLFNIDIQDQNIKTDFDITKEAGGFRRPMNITYEVTVDNPVLKIHLYWNGRGTC | |||
| Full Sequence |
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| Protein Sequence Length: 620 Download |
| MAPSPPLLLL LLVLTGLGLA AAQPEGPFPP FQQQRSTNAA DAAALRAVFQ QWGLAAAAGA 60 PEEDPCQKRV WLQSFATNAS IDCGCDAANG ECRITHLNVT GFWNISVIPP ALFNLTELVS 120 LDLSNNNLSG SIPPEVSNLS KLETWHFNNN KLSGPFPNES SRLGSLQSLW MFDNYIEGLL 180 PEFIANFTNL TDLRIYGMKL RGPIPKNFSN LINLEKLMLG DLDGGNSTFN FIADWANLST 240 LSLRKCGIID QLPSTPPKLP KLTDLRSNNL SGSIQQLLPY RSSRYLYVGE NNFSGQLPSE 300 IVQSSLALDI SYNPLLNGSL PNIPADRKWP INYIGTSIDA SRTINSENLT LLNCLGMKEC 360 NRTSYTNPIT SFAVNCGGKQ KTYQDSLPIT FSDDTSNLGA AGIHVDTDKQ WVVSHVGSDP 420 VVSESPGIVN TNQGFLGVDM PELYQTARTS RSALSYYVVG LSNGKYTVQL FFAEIVIDSQ 480 LNHGPGRRLF NIDIQDQNIK TDFDITKEAG GFRRPMNITY EVTVDNPVLK IHLYWNGRGT 540 CCIPYEGAYG PLVSAIRVFR PKNPNNIPPP TPPRSARPDN KRRGVVVGIA ALCIAMAVIS 600 SSVAYLWWKW VSLVKHPNA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00113 | PLN00113 | 4.0e-9 | 108 | 323 | 222 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 2.0e-10 | 130 | 298 | 170 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 3.0e-13 | 108 | 321 | 220 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 2.0e-16 | 101 | 351 | 273 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 1.0e-44 | 370 | 556 | 189 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC80088.1 | 0 | 23 | 619 | 26 | 607 | hypothetical protein OsI_21825 [Oryza sativa Indica Group] |
| GenBank | EEE65161.1 | 0 | 23 | 366 | 26 | 339 | hypothetical protein OsJ_20262 [Oryza sativa Japonica Group] |
| GenBank | EEE65161.1 | 1e-36 | 472 | 619 | 338 | 480 | hypothetical protein OsJ_20262 [Oryza sativa Japonica Group] |
| RefSeq | NP_001056921.1 | 0 | 23 | 619 | 99 | 680 | Os06g0167500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002436559.1 | 0 | 23 | 619 | 25 | 564 | hypothetical protein SORBIDRAFT_10g004730 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ogq_A | 0.000000000002 | 108 | 298 | 93 | 285 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 1ogq_A | 0.009 | 120 | 214 | 54 | 151 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 3rgz_A | 0.0000000001 | 108 | 221 | 410 | 523 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 3rgz_A | 0.00000003 | 104 | 321 | 211 | 435 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
| PDB | 3rgz_A | 0.0000005 | 110 | 206 | 626 | 722 | A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense |
