| PULID | Characterization Method(s) | Substrate | Organism | Publication | Publish Date | Type | Num Genes | Num CAZymes | CazyFamily |
|---|---|---|---|---|---|---|---|---|---|
| PUL0007 | sequence homology analysis | galactan | Leuconostoc gelidum | 27274361 Complete genome sequence of Leuconostoc gelidum subsp. gasicomitatum KG16-1, isolated from vacuum-packaged vegetable sausages. Stand Genomic Sci. 2016 Jun 7;11:40. doi: 10.1186/s40793-016-0164-8. eCollection 2016. |
2016 | degradation | 8 | 2 | GH53, GH42 |
| PUL0014 | sequence homology analysis, growth assay | pectin | Geobacillus thermodenitrificans | 28900693 Complete Genome Sequence of Geobacillus thermodenitrificans T12, A Potential Host for Biotechnological Applications. Curr Microbiol. 2018 Jan;75(1):49-56. doi: 10.1007/s00284-017-1349-0. Epub 2017 Sep 12. |
2018 Jan | degradation | 9 | 2 | PL1_6, PL1, GH105 |
| PUL0025 | sugar utilization assay, NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 32093600 Elucidation of the K32 Capsular Polysaccharide Structure and Characterization of the KL32 Gene Cluster of Acinetobacter baumannii LUH5549. Biochemistry (Mosc). 2020 Feb;85(2):241-247. doi: 10.1134/S000629792002011X. |
2020 Feb | biosynthesis | 18 | 4 | GT2, GT4, GT0, GT2 |
| PUL0043 | Smith degradation, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 29886169 Structure and gene cluster of the K125 capsular polysaccharide from Acinetobacter baumannii MAR13-1452. Int J Biol Macromol. 2018 Oct 1;117:1195-1199. doi: 10.1016/j.ijbiomac.2018.06.029. Epub 2018 Jun 7. |
2018 Oct 1 | biosynthesis | 23 | 3 | GT4 |
| PUL0046 | NMR, sequence homology analysis | O-antigen | Escherichia coli | 29738687 O-Antigens of Escherichia coli Strains O81 and HS3-104 Are Structurally and Genetically Related, Except O-Antigen Glucosylation in E. coli HS3-104. Biochemistry (Mosc). 2018 May;83(5):534-541. doi: 10.1134/S0006297918050061. |
2018 May | biosynthesis | 16 | 5 | GT2 |
| PUL0047 | sugar utilization assay, NMR, sequence homology analysis | O-antigen | Escherichia albertii | 31622726 Escherichia albertii EA046 (O9) harbors two polysaccharide gene clusters for synthesis of the O-antigen by the Wzx/Wzy-dependent pathway and a mannan shared by Escherichia coli O8 by the Wzm/Wzt-dependent pathway. Int J Biol Macromol. 2020 Jan 1;142:609-614. doi: 10.1016/j.ijbiomac.2019.09.135. Epub 2019 Oct 14. |
2020 Jan 1 | biosynthesis | 25 | 8 | GT4, GT4 |
| PUL0051 | sequence homology analysis | alginate | Cellulophaga lytica | 29795267 Ancient acquisition of "alginate utilization loci" by human gut microbiota. Sci Rep. 2018 May 23;8(1):8075. doi: 10.1038/s41598-018-26104-1. |
2018 May 23 | degradation | 6 | 2 | PL6_1, PL6, PL17_2, PL17 |
| PUL0052 | sequence homology analysis | alginate | Maricaulis maris | 29795267 Ancient acquisition of "alginate utilization loci" by human gut microbiota. Sci Rep. 2018 May 23;8(1):8075. doi: 10.1038/s41598-018-26104-1. |
2018 May 23 | degradation | 10 | 2 | PL6, PL6_1, PL17, PL17_2 |
| PUL0053 | sequence homology analysis | alginate | Stenotrophomonas maltophilia | 29795267 Ancient acquisition of "alginate utilization loci" by human gut microbiota. Sci Rep. 2018 May 23;8(1):8075. doi: 10.1038/s41598-018-26104-1. |
2018 May 23 | degradation | 8 | 2 | PL6_1, PL6, PL17, PL17_2 |
| PUL0054 | sequence homology analysis | alginate | Alteromonas macleodii | 29795267 Ancient acquisition of "alginate utilization loci" by human gut microbiota. Sci Rep. 2018 May 23;8(1):8075. doi: 10.1038/s41598-018-26104-1. |
2018 May 23 | degradation | 9 | 2 | PL6, PL6_1, PL17_2, PL17 |
| PUL0055 | sequence homology analysis | alginate | Bacteroides sp. 1_1_30 | 29795267 Ancient acquisition of "alginate utilization loci" by human gut microbiota. Sci Rep. 2018 May 23;8(1):8075. doi: 10.1038/s41598-018-26104-1. |
2018 May 23 | degradation | 7 | 2 | PL17, PL17_2, PL6, PL6_1 |
| PUL0056 | sequence homology analysis | alginate | Bacteroides eggerthii | 29795267 Ancient acquisition of "alginate utilization loci" by human gut microbiota. Sci Rep. 2018 May 23;8(1):8075. doi: 10.1038/s41598-018-26104-1. |
2018 May 23 | degradation | 5 | 3 | PL6_1, PL6, PL17, PL17_2 |
| PUL0057 | NMR, sequence homology analysis | O-antigen | Escherichia coli | 29787897 Structural and genetic relatedness of the O-antigens of Escherichia coli O50 and O2. Carbohydr Res. 2018 Jul 15;464:8-11. doi: 10.1016/j.carres.2018.05.001. Epub 2018 May 7. |
2018 Jul 15 | biosynthesis | 13 | 5 | GT4, GT4 |
| PUL0059 | NMR, sequence homology analysis | O-antigen | Escherichia coli | 29787897 Structural and genetic relatedness of the O-antigens of Escherichia coli O50 and O2. Carbohydr Res. 2018 Jul 15;464:8-11. doi: 10.1016/j.carres.2018.05.001. Epub 2018 May 7. |
2018 Jul 15 | biosynthesis | 13 | 3 | GT2 |
| PUL0060 | NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 31421354 Acinetobacter baumannii K116 capsular polysaccharide structure is a hybrid of the K14 and revised K37 structures. Carbohydr Res. 2019 Oct 1;484:107774. doi: 10.1016/j.carres.2019.107774. Epub 2019 Aug 8. |
2019 Oct 1 | biosynthesis | 24 | 4 | GT2, GT2, GT4, GT2 |
| PUL0061 | NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 31421354 Acinetobacter baumannii K116 capsular polysaccharide structure is a hybrid of the K14 and revised K37 structures. Carbohydr Res. 2019 Oct 1;484:107774. doi: 10.1016/j.carres.2019.107774. Epub 2019 Aug 8. |
2019 Oct 1 | biosynthesis | 35 | 4 | GT2, GT2, GT4, GT2, GT4, CE4 |
| PUL0062 | NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 31421354 Acinetobacter baumannii K116 capsular polysaccharide structure is a hybrid of the K14 and revised K37 structures. Carbohydr Res. 2019 Oct 1;484:107774. doi: 10.1016/j.carres.2019.107774. Epub 2019 Aug 8. |
2019 Oct 1 | biosynthesis | 19 | 4 | GT2, GT2, GT4, GT2 |
| PUL0069 | sugar utilization assay, NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 30664967 Production of the K16 capsular polysaccharide by Acinetobacter baumannii ST25 isolate D4 involves a novel glycosyltransferase encoded in the KL16 gene cluster. Int J Biol Macromol. 2019 May 1;128:101-106. doi: 10.1016/j.ijbiomac.2019.01.080. Epub 2019 Jan 18. |
2019 May 1 | biosynthesis | 22 | 2 | GT0, GT2 |
| PUL0070 | sugar utilization assay, NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 30664967 Production of the K16 capsular polysaccharide by Acinetobacter baumannii ST25 isolate D4 involves a novel glycosyltransferase encoded in the KL16 gene cluster. Int J Biol Macromol. 2019 May 1;128:101-106. doi: 10.1016/j.ijbiomac.2019.01.080. Epub 2019 Jan 18. |
2019 May 1 | biosynthesis | 36 | 3 | GT52, GT0, GT14, GT2, GT25, GT4, CE4 |
| PUL0071 | sugar utilization assay, NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 30664967 Production of the K16 capsular polysaccharide by Acinetobacter baumannii ST25 isolate D4 involves a novel glycosyltransferase encoded in the KL16 gene cluster. Int J Biol Macromol. 2019 May 1;128:101-106. doi: 10.1016/j.ijbiomac.2019.01.080. Epub 2019 Jan 18. |
2019 May 1 | biosynthesis | 38 | 4 | GT0, GT14, GT2, GT25, GT4, CE4 |
| PUL0072 | sugar utilization assay, NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 30664967 Production of the K16 capsular polysaccharide by Acinetobacter baumannii ST25 isolate D4 involves a novel glycosyltransferase encoded in the KL16 gene cluster. Int J Biol Macromol. 2019 May 1;128:101-106. doi: 10.1016/j.ijbiomac.2019.01.080. Epub 2019 Jan 18. |
2019 May 1 | biosynthesis | 22 | 2 | GT2, GT0 |
| PUL0073 | sugar utilization assay, NMR, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 30664967 Production of the K16 capsular polysaccharide by Acinetobacter baumannii ST25 isolate D4 involves a novel glycosyltransferase encoded in the KL16 gene cluster. Int J Biol Macromol. 2019 May 1;128:101-106. doi: 10.1016/j.ijbiomac.2019.01.080. Epub 2019 Jan 18. |
2019 May 1 | biosynthesis | 22 | 2 | GT2 |
| PUL0074 | sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 31396168 Identification of Potential Virulence Factors in the Model Strain Acinetobacter baumannii A118. Front Microbiol. 2019 Jul 23;10:1599. doi: 10.3389/fmicb.2019.01599. eCollection 2019. |
2019 | biosynthesis | 36 | 5 | GT2, GT4 |
| PUL0075 | sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii | 31396168 Identification of Potential Virulence Factors in the Model Strain Acinetobacter baumannii A118. Front Microbiol. 2019 Jul 23;10:1599. doi: 10.3389/fmicb.2019.01599. eCollection 2019. |
2019 | biosynthesis | 25 | 5 | GT2, GT4, GT2 |
| PUL0076 | sequence homology analysis | capsule polysaccharide, outer core capsule polysaccharide | Acinetobacter baumannii | 31396168 Identification of Potential Virulence Factors in the Model Strain Acinetobacter baumannii A118. Front Microbiol. 2019 Jul 23;10:1599. doi: 10.3389/fmicb.2019.01599. eCollection 2019. |
2019 | biosynthesis | 7 | 7 | GT4, CE4 |
| PUL0077 | sequence homology analysis | capsule polysaccharide, outer core capsule polysaccharide | Acinetobacter baumannii | 31396168 Identification of Potential Virulence Factors in the Model Strain Acinetobacter baumannii A118. Front Microbiol. 2019 Jul 23;10:1599. doi: 10.3389/fmicb.2019.01599. eCollection 2019. |
2019 | biosynthesis | 11 | 7 | GT4, CE4 |
| PUL0079 | sequence homology analysis | capsule polysaccharide, outer core capsule polysaccharide | Acinetobacter baumannii | 31396168 Identification of Potential Virulence Factors in the Model Strain Acinetobacter baumannii A118. Front Microbiol. 2019 Jul 23;10:1599. doi: 10.3389/fmicb.2019.01599. eCollection 2019. |
2019 | biosynthesis | 16 | 6 | CE4, GT4, GT2 |
| PUL0080 | sequence homology analysis | capsule polysaccharide, outer core capsule polysaccharide | Acinetobacter baumannii | 31396168 Identification of Potential Virulence Factors in the Model Strain Acinetobacter baumannii A118. Front Microbiol. 2019 Jul 23;10:1599. doi: 10.3389/fmicb.2019.01599. eCollection 2019. |
2019 | biosynthesis | 12 | 6 | CE4, GT4, GT2 |
| PUL0090 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Escherichia coli | 31220629 Structure elucidation and gene cluster characterization of the O-antigen of Yersinia kristensenii capital ES, Cyrillic-134. Carbohydr Res. 2019 Jul 15;481:9-15. doi: 10.1016/j.carres.2019.06.001. Epub 2019 Jun 6. |
2019 Jul 15 | biosynthesis | 12 | 4 | GT4, GT4, GT4 |
| PUL0091 | sequence homology analysis | O-glycan, N-glycan | Bacteroides vulgatus | 31275257 Investigating Host Microbiota Relationships Through Functional Metagenomics. Front Microbiol. 2019 Jun 7;10:1286. doi: 10.3389/fmicb.2019.01286. eCollection 2019. |
2019 | degradation | 8 | 6 | CE9, GH2, GH92, GH20, GH20, GH2 |
| PUL0092 | sequence homology analysis | O-glycan, N-glycan | Bacteroides vulgatus | 31275257 Investigating Host Microbiota Relationships Through Functional Metagenomics. Front Microbiol. 2019 Jun 7;10:1286. doi: 10.3389/fmicb.2019.01286. eCollection 2019. |
2019 | degradation | 10 | 4 | GH20, GH2, GH20, GH33 |
| PUL0097 | sequence homology analysis | O-glycan, N-glycan | Bacteroides massiliensis | 31275257 Investigating Host Microbiota Relationships Through Functional Metagenomics. Front Microbiol. 2019 Jun 7;10:1286. doi: 10.3389/fmicb.2019.01286. eCollection 2019. |
2019 | degradation | 15 | 10 | GH33, GH20, GH2, GH20, GH20, GH92, GH2, CE9 |
| PUL0098 | sequence homology analysis | O-glycan, N-glycan | Bacteroides plebeius | 31275257 Investigating Host Microbiota Relationships Through Functional Metagenomics. Front Microbiol. 2019 Jun 7;10:1286. doi: 10.3389/fmicb.2019.01286. eCollection 2019. |
2019 | degradation | 12 | 3 | GH33 |
| PUL0100 | transposon mutagenesis, growth assay | chitobiose | Escherichia coli | 9405618 Wild-type Escherichia coli grows on the chitin disaccharide, N,N'-diacetylchitobiose, by expressing the cel operon. Proc Natl Acad Sci U S A. 1997 Dec 23;94(26):14367-71. doi: 10.1073/pnas.94.26.14367. |
1997 Dec 23 | degradation | 6 | 1 | GH4 |
| PUL0101 | sequence homology analysis | O-glycan, N-glycan | Bacteroides plebeius | 31275257 Investigating Host Microbiota Relationships Through Functional Metagenomics. Front Microbiol. 2019 Jun 7;10:1286. doi: 10.3389/fmicb.2019.01286. eCollection 2019. |
2019 | degradation | 19 | 5 | CBM67, GH78, GH3, GH115, GH97 |
| PUL0108 | sequence homology analysis | O-glycan, N-glycan | Bacteroides uniformis | 31275257 Investigating Host Microbiota Relationships Through Functional Metagenomics. Front Microbiol. 2019 Jun 7;10:1286. doi: 10.3389/fmicb.2019.01286. eCollection 2019. |
2019 | degradation | 27 | 3 | GH2, GH3 |
| PUL0113 | sequence homology analysis | O-glycan, N-glycan | Faecalibacterium prausnitzii | 31275257 Investigating Host Microbiota Relationships Through Functional Metagenomics. Front Microbiol. 2019 Jun 7;10:1286. doi: 10.3389/fmicb.2019.01286. eCollection 2019. |
2019 | degradation | 23 | 1 | GH1 |
| PUL0126 | growth assay, sequence homology analysis | alginate, ulvan | Alteromonas sp. 76-1 | 30936857 Adaptations of Alteromonas sp. 76-1 to Polysaccharide Degradation: A CAZyme Plasmid for Ulvan Degradation and Two Alginolytic Systems. Front Microbiol. 2019 Mar 18;10:504. doi: 10.3389/fmicb.2019.00504. eCollection 2019. |
2019 | degradation | 8 | 2 | PL7, PL7_5, PL6, PL6_1 |
| PUL0127 | growth assay, sequence homology analysis | alginate, ulvan | Alteromonas sp. 76-1 | 30936857 Adaptations of Alteromonas sp. 76-1 to Polysaccharide Degradation: A CAZyme Plasmid for Ulvan Degradation and Two Alginolytic Systems. Front Microbiol. 2019 Mar 18;10:504. doi: 10.3389/fmicb.2019.00504. eCollection 2019. |
2019 | degradation | 12 | 3 | PL7, PL7_5, CBM32, PL6_3, PL6, PL7, PL7_5, PL6, PL6_1 |
| PUL0131 | sequence homology analysis | O-antigen | Acidiphilium rubrum | 30385338 Structure and gene cluster of the O-polysaccharide of Yersinia rohdei H274-36/78. Int J Biol Macromol. 2019 Feb 1;122:555-561. doi: 10.1016/j.ijbiomac.2018.10.189. Epub 2018 Oct 29. |
2019 Feb 1 | biosynthesis | 12 | 3 | GT4, GT4, GT4 |
| PUL0133 | sequence homology analysis | exopolysaccharide | Lactobacillus acidophilus | 15671160 Complete genome sequence of the probiotic lactic acid bacterium Lactobacillus acidophilus NCFM. Proc Natl Acad Sci U S A. 2005 Mar 15;102(11):3906-12. doi: 10.1073/pnas.0409188102. Epub 2005 Jan 25. |
2005 Mar 15 | biosynthesis | 14 | 3 | GT2, GT2 |
| PUL0134 | sequence homology analysis | pectin | Gramella flava | 30341080 Biochemical Reconstruction of a Metabolic Pathway from a Marine Bacterium Reveals Its Mechanism of Pectin Depolymerization. Appl Environ Microbiol. 2018 Dec 13;85(1):e02114-18. doi: 10.1128/AEM.02114-18. Print 2019 Jan 1. |
2019 Jan 1 | degradation | 29 | 10 | CE8, PL9_1, GH28, GH105, GH43_10, GH28, PL9_1, CE12, CE8, CE10, CE12, PL10_1 |
| PUL0136 | sequence homology analysis | pectin | Pseudoalteromonas haloplanktis | 30341080 Biochemical Reconstruction of a Metabolic Pathway from a Marine Bacterium Reveals Its Mechanism of Pectin Depolymerization. Appl Environ Microbiol. 2018 Dec 13;85(1):e02114-18. doi: 10.1128/AEM.02114-18. Print 2019 Jan 1. |
2019 Jan 1 | degradation | 26 | 6 | PL1, PL1_5, CE8, PL1, PL1_2, GH105, GH105, GH28 |
| PUL0137 | sequence homology analysis | lactose | Bifidobacterium animalis subsp. animalis | 30306201 Staying alive: growth and survival of Bifidobacterium animalis subsp. animalis under in vitro and in vivo conditions. Appl Microbiol Biotechnol. 2018 Dec;102(24):10645-10663. doi: 10.1007/s00253-018-9413-7. Epub 2018 Oct 10. |
2018 Dec | degradation | 3 | 1 | GH2 |
| PUL0138 | sequence homology analysis | raffinose, melibiose | Bifidobacterium animalis subsp. animalis | 30306201 Staying alive: growth and survival of Bifidobacterium animalis subsp. animalis under in vitro and in vivo conditions. Appl Microbiol Biotechnol. 2018 Dec;102(24):10645-10663. doi: 10.1007/s00253-018-9413-7. Epub 2018 Oct 10. |
2018 Dec | degradation | 7 | 2 | GH36, GH36 |
| PUL0139 | sequence homology analysis | arabinose | Bifidobacterium animalis subsp. animalis | 30306201 Staying alive: growth and survival of Bifidobacterium animalis subsp. animalis under in vitro and in vivo conditions. Appl Microbiol Biotechnol. 2018 Dec;102(24):10645-10663. doi: 10.1007/s00253-018-9413-7. Epub 2018 Oct 10. |
2018 Dec | degradation | 12 | 1 | GH51 |
| PUL0140 | sequence homology analysis | xylose | Bifidobacterium animalis subsp. animalis | 30306201 Staying alive: growth and survival of Bifidobacterium animalis subsp. animalis under in vitro and in vivo conditions. Appl Microbiol Biotechnol. 2018 Dec;102(24):10645-10663. doi: 10.1007/s00253-018-9413-7. Epub 2018 Oct 10. |
2018 Dec | degradation | 11 | 5 | GH43, GH43_12, GH43, GH43_11, GH43_10 |
| PUL0141 | sequence homology analysis | sucrose | Bifidobacterium animalis subsp. animalis | 30306201 Staying alive: growth and survival of Bifidobacterium animalis subsp. animalis under in vitro and in vivo conditions. Appl Microbiol Biotechnol. 2018 Dec;102(24):10645-10663. doi: 10.1007/s00253-018-9413-7. Epub 2018 Oct 10. |
2018 Dec | degradation | 4 | 1 | GH13_18, GH13 |
| PUL0142 | sequence homology analysis | maltose | Bifidobacterium animalis subsp. animalis | 30306201 Staying alive: growth and survival of Bifidobacterium animalis subsp. animalis under in vitro and in vivo conditions. Appl Microbiol Biotechnol. 2018 Dec;102(24):10645-10663. doi: 10.1007/s00253-018-9413-7. Epub 2018 Oct 10. |
2018 Dec | degradation | 5 | 1 | GH13_30 |
| PUL0143 | sequence homology analysis | exopolysaccharide | Bifidobacterium animalis subsp. animalis | 30306201 Staying alive: growth and survival of Bifidobacterium animalis subsp. animalis under in vitro and in vivo conditions. Appl Microbiol Biotechnol. 2018 Dec;102(24):10645-10663. doi: 10.1007/s00253-018-9413-7. Epub 2018 Oct 10. |
2018 Dec | degradation | 12 | 3 | GT2, GT32 |
| PUL0146 | sequence homology analysis | carrageenan | Pseudoalteromonas atlantica | 30524390 Evolutionary Evidence of Algal Polysaccharide Degradation Acquisition by Pseudoalteromonas carrageenovora 9(T) to Adapt to Macroalgal Niches. Front Microbiol. 2018 Nov 22;9:2740. doi: 10.3389/fmicb.2018.02740. eCollection 2018. |
2018 | degradation | 23 | 1 | GH16 |
| PUL0147 | sequence homology analysis | carrageenan | Pseudoalteromonas carrageenovora | 30524390 Evolutionary Evidence of Algal Polysaccharide Degradation Acquisition by Pseudoalteromonas carrageenovora 9(T) to Adapt to Macroalgal Niches. Front Microbiol. 2018 Nov 22;9:2740. doi: 10.3389/fmicb.2018.02740. eCollection 2018. |
2018 | degradation | 30 | 5 | GH16, GH16, GH150 |
| PUL0148 | sequence homology analysis | carrageenan | Zobellia galactanivorans | 30524390 Evolutionary Evidence of Algal Polysaccharide Degradation Acquisition by Pseudoalteromonas carrageenovora 9(T) to Adapt to Macroalgal Niches. Front Microbiol. 2018 Nov 22;9:2740. doi: 10.3389/fmicb.2018.02740. eCollection 2018. |
2018 | degradation | 15 | 4 | GH127, GH127, GH127, GH129 |
| PUL0149 | sequence homology analysis | carrageenan | Zobellia galactanivorans | 30524390 Evolutionary Evidence of Algal Polysaccharide Degradation Acquisition by Pseudoalteromonas carrageenovora 9(T) to Adapt to Macroalgal Niches. Front Microbiol. 2018 Nov 22;9:2740. doi: 10.3389/fmicb.2018.02740. eCollection 2018. |
2018 | degradation | 10 | 2 | GH110, GH110 |
| PUL0150 | sequence homology analysis | alginate | Pseudoalteromonas carrageenovora | 30524390 Evolutionary Evidence of Algal Polysaccharide Degradation Acquisition by Pseudoalteromonas carrageenovora 9(T) to Adapt to Macroalgal Niches. Front Microbiol. 2018 Nov 22;9:2740. doi: 10.3389/fmicb.2018.02740. eCollection 2018. |
2018 | degradation | 14 | 3 | PL6, PL6_1, PL17, PL17_2, PL6_3 |
| PUL0151 | sequence homology analysis, Northern Blot, RT-qPCR, electrophoretic mobility shift assay, clone and expression, gene deletion mutant and growth assay | alginate | Zobellia galactanivorans | 30524390, 32585009 Evolutionary Evidence of Algal Polysaccharide Degradation Acquisition by Pseudoalteromonas carrageenovora 9(T) to Adapt to Macroalgal Niches. Regulation of alginate catabolism involves a GntR family repressor in the marine flavobacterium Zobellia galactanivorans DsijT. Front Microbiol. 2018 Nov 22;9:2740. doi: 10.3389/fmicb.2018.02740. eCollection 2018. Nucleic Acids Res. 2020 Aug 20;48(14):7786-7800. doi: 10.1093/nar/gkaa533. |
2018,2020 Aug 20 | degradation | 12 | 2 | PL7, PL17_2, PL17 |
| PUL0152 | sequence homology analysis | alginate | Pseudoalteromonas atlantica | 30524390 Evolutionary Evidence of Algal Polysaccharide Degradation Acquisition by Pseudoalteromonas carrageenovora 9(T) to Adapt to Macroalgal Niches. Front Microbiol. 2018 Nov 22;9:2740. doi: 10.3389/fmicb.2018.02740. eCollection 2018. |
2018 | degradation | 8 | 1 | PL6, PL6_1 |
| PUL0160 | mass spectrometry, sequence homology analysis | alpha-mannan | Salegentibacter sp. Hel_I_6 | 30246424 Alpha- and beta-mannan utilization by marine Bacteroidetes. Environ Microbiol. 2018 Nov;20(11):4127-4140. doi: 10.1111/1462-2920.14414. Epub 2018 Oct 16. |
2018 Nov | degradation | 33 | 10 | GH92, GH92, GH43, GH43_34, GH125, CBM32, GH92, GH92, GH92, GH76, GH2, GH92 |
| PUL0161 | mass spectrometry, sequence homology analysis | alpha-mannan | Bacteroides thetaiotaomicron | 30246424 Alpha- and beta-mannan utilization by marine Bacteroidetes. Environ Microbiol. 2018 Nov;20(11):4127-4140. doi: 10.1111/1462-2920.14414. Epub 2018 Oct 16. |
2018 Nov | degradation | 26 | 6 | GH97, GH67, GH76, GH92, GH76, GH125 |
| PUL0162 | mass spectrometry, sequence homology analysis | alpha-mannan | Bacteroides thetaiotaomicron | 30246424 Alpha- and beta-mannan utilization by marine Bacteroidetes. Environ Microbiol. 2018 Nov;20(11):4127-4140. doi: 10.1111/1462-2920.14414. Epub 2018 Oct 16. |
2018 Nov | degradation | 13 | 2 | GH92, GH99 |
| PUL0163 | mass spectrometry, sequence homology analysis | alpha-mannan | Bacteroides thetaiotaomicron | 30246424 Alpha- and beta-mannan utilization by marine Bacteroidetes. Environ Microbiol. 2018 Nov;20(11):4127-4140. doi: 10.1111/1462-2920.14414. Epub 2018 Oct 16. |
2018 Nov | degradation | 21 | 7 | GH92, GH38, CBM32, GT32, GT32, GH130, GH125, GH76, GH92, GH76 |
| PUL0164 | mass spectrometry, sequence homology analysis, differential gene expression | beta-mannan | Leeuwenhoekiella sp. MAR_2009_132 | 30246424 Alpha- and beta-mannan utilization by marine Bacteroidetes. Environ Microbiol. 2018 Nov;20(11):4127-4140. doi: 10.1111/1462-2920.14414. Epub 2018 Oct 16. |
2018 Nov | degradation | 19 | 9 | CE2, GH3, GH5_7, GH26, GH130, GH26, GH5_2, GH5, GH27, GH9, GH26 |
| PUL0165 | mass spectrometry, sequence homology analysis, differential gene expression | beta-mannan | Salegentibacter sp. Hel_I_6 | 30246424 Alpha- and beta-mannan utilization by marine Bacteroidetes. Environ Microbiol. 2018 Nov;20(11):4127-4140. doi: 10.1111/1462-2920.14414. Epub 2018 Oct 16. |
2018 Nov | degradation | 17 | 6 | GH9, GH27, GH5, GH5_2, GH26, GH130, GH26 |
| PUL0167 | mass spectrometry, sequence homology analysis | beta-mannan | Bacteroides ovatus | 30246424 Alpha- and beta-mannan utilization by marine Bacteroidetes. Environ Microbiol. 2018 Nov;20(11):4127-4140. doi: 10.1111/1462-2920.14414. Epub 2018 Oct 16. |
2018 Nov | degradation | 12 | 4 | GH130, GH36, GH26, GH26 |
| PUL0173 | sequence homology analysis, NMR, sugar utilization assay | O-antigen | Escherichia coli | 27177202 Structure and gene cluster of the O-antigen of Escherichia coli O156 containing a pyruvic acid acetal. Carbohydr Res. 2016 Jul 22;430:24-28. doi: 10.1016/j.carres.2016.04.025. Epub 2016 Apr 29. |
2016 Jul 22 | biosynthesis | 20 | 4 | GT4, GT4, GT2 |
| PUL0208 | growth assay | chitin | Pseudoalteromonas luteoviolacea | 31213521 Marine Chitinolytic Pseudoalteromonas Represents an Untapped Reservoir of Bioactive Potential. mSystems. 2019 Jun 18;4(4):e00060-19. doi: 10.1128/mSystems.00060-19. |
2019 Jun 18 | degradation | 3 | 3 | CBM5, GH18, CBM5, AA10, CBM5, GH18 |
| PUL0239 | fosmid library screen, sequence homology analysis | cellulose | Prevotella sp. Sc00026 | 24448980 Analysis of the bovine rumen microbiome reveals a diversity of Sus-like polysaccharide utilization loci from the bacterial phylum Bacteroidetes. J Ind Microbiol Biotechnol. 2014 Mar;41(3):601-6. doi: 10.1007/s10295-013-1395-y. Epub 2014 Jan 22. |
2014 Mar | degradation | 18 | 10 | GH26, GH5_4, GH5_7, GH130, GH26, CE7, GH36, GH3 |
| PUL0240 | fosmid library screen, sequence homology analysis | cellulose | Prevotella sp. Sc00028 | 24448980 Analysis of the bovine rumen microbiome reveals a diversity of Sus-like polysaccharide utilization loci from the bacterial phylum Bacteroidetes. J Ind Microbiol Biotechnol. 2014 Mar;41(3):601-6. doi: 10.1007/s10295-013-1395-y. Epub 2014 Jan 22. |
2014 Mar | degradation | 11 | 5 | GH31, GH9, GH26 |
| PUL0241 | fosmid library screen, sequence homology analysis | cellulose | Prevotella sp. Sc00033 | 24448980 Analysis of the bovine rumen microbiome reveals a diversity of Sus-like polysaccharide utilization loci from the bacterial phylum Bacteroidetes. J Ind Microbiol Biotechnol. 2014 Mar;41(3):601-6. doi: 10.1007/s10295-013-1395-y. Epub 2014 Jan 22. |
2014 Mar | degradation | 7 | 3 | GH5, GH5_4, GH36 |
| PUL0242 | fosmid library screen, sequence homology analysis | cellulose | Prevotella sp. Sc00044 | 24448980 Analysis of the bovine rumen microbiome reveals a diversity of Sus-like polysaccharide utilization loci from the bacterial phylum Bacteroidetes. J Ind Microbiol Biotechnol. 2014 Mar;41(3):601-6. doi: 10.1007/s10295-013-1395-y. Epub 2014 Jan 22. |
2014 Mar | degradation | 9 | 3 | GH31, CBM72, GH5_4, GH26 |
| PUL0243 | fosmid library screen, sequence homology analysis | cellulose | Prevotella sp. Sc00066 | 24448980 Analysis of the bovine rumen microbiome reveals a diversity of Sus-like polysaccharide utilization loci from the bacterial phylum Bacteroidetes. J Ind Microbiol Biotechnol. 2014 Mar;41(3):601-6. doi: 10.1007/s10295-013-1395-y. Epub 2014 Jan 22. |
2014 Mar | degradation | 12 | 4 | GH5_38, GH94, GH36 |
| PUL0248 | sequence homology analysis | capsule polysaccharide | Vibrio vulnificus | 24102883 Role of capsular polysaccharide (CPS) in biofilm formation and regulation of CPS production by quorum-sensing in Vibrio vulnificus. Mol Microbiol. 2013 Nov;90(4):841-57. doi: 10.1111/mmi.12401. Epub 2013 Oct 10. |
2013 Nov | degradation | 19 | 1 | PL12_3, PL0 |
| PUL0250 | sequence homology analysis | capsule polysaccharide | Vibrio vulnificus | 24102883 Role of capsular polysaccharide (CPS) in biofilm formation and regulation of CPS production by quorum-sensing in Vibrio vulnificus. Mol Microbiol. 2013 Nov;90(4):841-57. doi: 10.1111/mmi.12401. Epub 2013 Oct 10. |
2013 Nov | degradation | 30 | 1 | GT4, GT4, PL12, PL0, GT4 |
| PUL0428 | transposon mutagenesis, growth assay | exopolysaccharide | Staphylococcus epidermidis | 8809760 Molecular basis of intercellular adhesion in the biofilm-forming Staphylococcus epidermidis. Mol Microbiol. 1996 Jun;20(5):1083-91. doi: 10.1111/j.1365-2958.1996.tb02548.x. |
1996 Jun | biosynthesis | 5 | 1 | CE4 |
| PUL0429 | sequence homology analysis | O-antigen, unknown polysaccharide | Sinorhizobium meliloti | 21396969 The complete genome sequence of the dominant Sinorhizobium meliloti field isolate SM11 extends the S. meliloti pan-genome. J Biotechnol. 2011 Aug 20;155(1):20-33. doi: 10.1016/j.jbiotec.2010.12.018. Epub 2011 Mar 17. |
2011 Aug 20 | biosynthesis | 42 | 4 | GT2, GT2, GT4, GT2 |
| PUL0431 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Escherichia coli | 27454490 Structure elucidation and gene cluster characterization of the O-antigen of Escherichia coli O80. Carbohydr Res. 2016 Sep 2;432:83-7. doi: 10.1016/j.carres.2016.07.011. Epub 2016 Jul 14. |
2016 Sep 2 | biosynthesis | 18 | 4 | GT26 |
| PUL0432 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Escherichia coli | 27645300 Structures and gene clusters of the O-specific polysaccharides of the lipopolysaccharides of Escherichia coli O69 and O146 containing glycolactilic acids: ether conjugates of D-GlcNAc and D-Glc with (R)- and (S)-lactic acid. Glycoconj J. 2017 Feb;34(1):71-84. doi: 10.1007/s10719-016-9730-y. Epub 2016 Sep 19. |
2017 Feb | biosynthesis | 11 | 3 | GT4, GT2 |
| PUL0433 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Escherichia coli | 27645300 Structures and gene clusters of the O-specific polysaccharides of the lipopolysaccharides of Escherichia coli O69 and O146 containing glycolactilic acids: ether conjugates of D-GlcNAc and D-Glc with (R)- and (S)-lactic acid. Glycoconj J. 2017 Feb;34(1):71-84. doi: 10.1007/s10719-016-9730-y. Epub 2016 Sep 19. |
2017 Feb | biosynthesis | 12 | 3 | GT2 |
| PUL0446 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Escherichia albertii | 28494314 Structure and gene cluster of the O-antigen of Escherichia albertii O1 resembling the O-antigen of Pseudomonas aeruginosa O5. Carbohydr Res. 2017 Jun 29;446-447:28-31. doi: 10.1016/j.carres.2017.04.024. Epub 2017 May 2. |
2017 Jun 29 | biosynthesis | 17 | 2 | GT4 |
| PUL0447 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Escherichia albertii | 28672166 Structures and gene clusters of the O-antigens of Escherichia albertii O3, O4, O6, and O7. Carbohydr Res. 2017 Sep 8;449:17-22. doi: 10.1016/j.carres.2017.06.008. Epub 2017 Jun 17. |
2017 Sep 8 | biosynthesis | 14 | 4 | GT4, GT4 |
| PUL0448 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Escherichia albertii | 28672166 Structures and gene clusters of the O-antigens of Escherichia albertii O3, O4, O6, and O7. Carbohydr Res. 2017 Sep 8;449:17-22. doi: 10.1016/j.carres.2017.06.008. Epub 2017 Jun 17. |
2017 Sep 8 | biosynthesis | 19 | 4 | GT4 |
| PUL0449 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Escherichia albertii | 28672166 Structures and gene clusters of the O-antigens of Escherichia albertii O3, O4, O6, and O7. Carbohydr Res. 2017 Sep 8;449:17-22. doi: 10.1016/j.carres.2017.06.008. Epub 2017 Jun 17. |
2017 Sep 8 | biosynthesis | 13 | 4 | GT4, GT2, GT4 |
| PUL0450 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Escherichia albertii | 28672166 Structures and gene clusters of the O-antigens of Escherichia albertii O3, O4, O6, and O7. Carbohydr Res. 2017 Sep 8;449:17-22. doi: 10.1016/j.carres.2017.06.008. Epub 2017 Jun 17. |
2017 Sep 8 | biosynthesis | 14 | 3 | GT52, GT2, GT2 |
| PUL0451 | sequence homology analysis, sugar utilization assay, NMR, gas chromatography and mass spectrometry | O-antigen | Streptococcus pneumoniae | 28837839 Genetic and structural elucidation of capsular polysaccharides from Streptococcus pneumoniae serotype 23A and 23B, and comparison to serotype 23F. Carbohydr Res. 2017 Oct 10;450:19-29. doi: 10.1016/j.carres.2017.08.006. Epub 2017 Aug 18. |
2017 Oct 10 | biosynthesis | 18 | 5 | GT4 |
| PUL0452 | sequence homology analysis, sugar utilization assay, NMR, gas chromatography and mass spectrometry | O-antigen | Streptococcus pneumoniae | 28837839 Genetic and structural elucidation of capsular polysaccharides from Streptococcus pneumoniae serotype 23A and 23B, and comparison to serotype 23F. Carbohydr Res. 2017 Oct 10;450:19-29. doi: 10.1016/j.carres.2017.08.006. Epub 2017 Aug 18. |
2017 Oct 10 | biosynthesis | 18 | 5 | GT4, GT2 |
| PUL0453 | sequence homology analysis, sugar utilization assay, NMR, gas chromatography and mass spectrometry | O-antigen | Streptococcus pneumoniae | 28837839 Genetic and structural elucidation of capsular polysaccharides from Streptococcus pneumoniae serotype 23A and 23B, and comparison to serotype 23F. Carbohydr Res. 2017 Oct 10;450:19-29. doi: 10.1016/j.carres.2017.08.006. Epub 2017 Aug 18. |
2017 Oct 10 | biosynthesis | 18 | 5 | GT4 |
| PUL0461 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Yersinia kristensenii | 31220629 Structure elucidation and gene cluster characterization of the O-antigen of Yersinia kristensenii capital ES, Cyrillic-134. Carbohydr Res. 2019 Jul 15;481:9-15. doi: 10.1016/j.carres.2019.06.001. Epub 2019 Jun 6. |
2019 Jul 15 | biosynthesis | 12 | 4 | GT4, GT4, GT4 |
| PUL0462 | sequence homology analysis, sugar utilization assay, NMR | O-antigen | Escherichia coli | 24607538 Structure elucidation and gene cluster annotation of the O-antigen of Escherichia coli O39; application of anhydrous trifluoroacetic acid for selective cleavage of glycosidic linkages. Carbohydr Res. 2014 Mar 31;388:30-6. doi: 10.1016/j.carres.2014.02.013. Epub 2014 Feb 18. |
2014 Mar 31 | biosynthesis | 14 | 4 | GT0, GT4, GT2 |
| PUL0473 | growth assay | alpha-glucan, starch | Flavobacterium johnsoniae | 19717629 Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 8 | 3 | CBM26, GH13, GH97, GH13 |
| PUL0474 | growth assay | beta-glucan, xylan | Flavobacterium johnsoniae | 19717629 Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 9 | 5 | GH30_1, GH30, GH30_1, GH30, GH3, GH30_3, GH3 |
| PUL0476 | growth assay | hemicellulose, pectin | Flavobacterium johnsoniae | 19717629 Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 11 | 6 | GH5, GH5_13, GH43_18, GH2, GH43, GH43_26, GH43_31, GH29, CBM32 |
| PUL0477 | growth assay | beta-glucan | Flavobacterium johnsoniae | 19717629 Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 6 | 2 | GH16, GH16 |
| PUL0478 | growth assay | alpha-glucan, starch | Flavobacterium johnsoniae | 19717629 Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 8 | 4 | GH2, GH92, GH92, GH125 |
| PUL0479 | growth assay | pectin | Flavobacterium johnsoniae | 19717629 Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 20 | 12 | GH43, GH43_34, GH43_19, GH27, GH2, GH95, GH51, GH28, GH28, GH2, GH92, GH92, GH89 |
| PUL0480 | growth assay | hemicellulose | Flavobacterium johnsoniae | 19717629 Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 9 | 4 | GH3, GH10, GH16, GH8 |
| PUL0481 | growth assay, enzyme activity assay | hemicellulose | Flavobacterium johnsoniae | 19717629, 32266006 Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Multimodular fused acetyl-feruloyl esterases from soil and gut Bacteroidetes improve xylanase depolymerization of recalcitrant biomass. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. Biotechnol Biofuels. 2020 Mar 31;13:60. doi: 10.1186/s13068-020-01698-9. eCollection 2020. |
2009 Nov,2020 | degradation | 13 | 7 | GH97, GH3, GH43, GH43_10, CBM22, GH146, GH115, GH43_12, GH3 |
| PUL0482 | growth assay | pectin | Flavobacterium johnsoniae | 19717629 Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 27 | 17 | GH78, CBM67, GH142, GH95, GH78, CBM67, GH143, GH43_18, GH43, GH28, GH140, PL1, CE8, PL1_2, PL1, CE8, PL1_2, CE8, GH127, PL1, PL1_2, GH139, GH106, GH2, GH137, GH78 |
| PUL0483 | growth assay | pectin | Flavobacterium johnsoniae | 19717629 Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 12 | 5 | GH2, CE12, CE4, GH28, GH117, GH106, GH105 |
| PUL0484 | growth assay | pectin | Flavobacterium johnsoniae | 19717629 Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 12 | 8 | CE12, GH28, PL10, CE8, PL10_1, GH43_10, GH43, GH105, GH105, GH105, GH28 |
| PUL0485 | growth assay | dextran | Flavobacterium johnsoniae | 19717629 Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 9 | 5 | GH65, GH97, GH31, GH66 |
| PUL0487 | growth assay | chitin | Flavobacterium johnsoniae | 19717629 Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 10 | 3 | GH18, GH20, GH18 |
| PUL0488 | growth assay | beta-mannan | Flavobacterium johnsoniae | 19717629 Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl Environ Microbiol. 2009 Nov;75(21):6864-75. doi: 10.1128/AEM.01495-09. Epub 2009 Aug 28. |
2009 Nov | degradation | 14 | 7 | GH5, GH5_2, GH27, GH26, GH130, GH26, GH5_7, GH97 |
| PUL0489 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 21 | 2 | GT4 |
| PUL0490 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 20 | 4 | GT2, GT11 |
| PUL0491 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 20 | 4 | GT46, GT0 |
| PUL0492 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 21 | 3 | GT2, GT0 |
| PUL0493 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 14 | 5 | GT2, GT4, GT4, GT0, GT10, GT2 |
| PUL0494 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 23 | 3 | GT4, GT4, GT4 |
| PUL0495 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 22 | 4 | GT2, GT2, GT4, GT94, GT2 |
| PUL0496 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 16 | 5 | GT2, GT2, GT2, GT2 |
| PUL0498 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 25 | 8 | GT2, GT4, GT11, GT4, GT4, GT4, GT26 |
| PUL0499 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 14 | 7 | GT2, GT2, GT101, GT0, GT4, GT2, GT2, GT2 |
| PUL0500 | sequence homology analysis, microscopy | O-glycan | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 9 | 4 | GT4, GT0, GT94, GT4, GT4, GT2 |
| PUL0501 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 9 | 3 | GT2, GT4 |
| PUL0502 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 20 | 5 | GT11, GT2, GT2, GT4 |
| PUL0503 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 16 | 6 | GT11, GT4, GT2, GT4, CE4, CE0, GT4, GT2 |
| PUL0504 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 16 | 5 | GT2, GT2, GT2, GT11, GT0, GT10 |
| PUL0505 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 14 | 5 | GT4, GT4, GT4, GT2, GT2 |
| PUL0506 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 15 | 4 | GT8, GT2, GT2 |
| PUL0507 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 19 | 4 | PL12 |
| PUL0509 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 14 | 6 | GT2, GT4, GT2, GT2, GT2, GT10 |
| PUL0510 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 27 | 7 | GT2, GT2, GT2, GT2, GT4, GT4, GT26 |
| PUL0511 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 14 | 6 | GT2, GT2, GT4, GT2, GT2 |
| PUL0512 | sequence homology analysis, microscopy | O-glycan | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 10 | 4 | GT4, GT0, GT94, GT4, GT4, GT2 |
| PUL0513 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 16 | 2 | GT2, GT2 |
| PUL0514 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 20 | 5 | GT11, GT2, GT2, GT4 |
| PUL0515 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 20 | 4 | GT0, GT46 |
| PUL0516 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 13 | 5 | GT4, GT4, GT2, GT4 |
| PUL0517 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 19 | 5 | GT2, GT2, GT11, GT2 |
| PUL0518 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 22 | 4 | GT2, GT2, GT4, GT4 |
| PUL0521 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 23 | 3 | GT2, GT4 |
| PUL0522 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 20 | 7 | GT2, GT4, GT2, GT32, GT2, GT2 |
| PUL0523 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 14 | 5 | GT4, GT4, GT4, GT26 |
| PUL0524 | sequence homology analysis, microscopy | capsule polysaccharide | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 13 | 7 | GT2, GT2, GT4, GT101, GT0, GT4, GT2, GT2 |
| PUL0525 | sequence homology analysis, microscopy | O-glycan | Bacteroides fragilis | 20829291 Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis. Microbiology (Reading). 2010 Nov;156(Pt 11):3255-3269. doi: 10.1099/mic.0.042978-0. Epub 2010 Sep 9. |
2010 Nov | biosynthesis | 9 | 5 | GT0, GT94, GT4, GT4, GT2 |
| PUL0558 | gene deletion mutant and growth assay, growth assay, enzyme activity assay | rhamnogalacturonan | Bacteroides thetaiotaomicron | 28329766 Complex pectin metabolism by gut bacteria reveals novel catalytic functions. Nature. 2017 Apr 6;544(7648):65-70. doi: 10.1038/nature21725. Epub 2017 Mar 22. |
2017 Apr 6 | degradation | 50 | 20 | GH2, GH139, GH106, GH2, GH2, GH2, CBM57, GH137, GH138, GH78, GH141, GH127, GH95, GH105, GH140, CBM67, GH33, GH78, GH28, CBM67, GH78, GH142, GH143, GH43_18, GH43, CE8, PL1_2, PL1 |
| PUL0559 | gene deletion mutant and growth assay, growth assay, enzyme activity assay | rhamnogalacturonan | Bacteroides thetaiotaomicron | 28329766 Complex pectin metabolism by gut bacteria reveals novel catalytic functions. Nature. 2017 Apr 6;544(7648):65-70. doi: 10.1038/nature21725. Epub 2017 Mar 22. |
2017 Apr 6 | degradation | 12 | 5 | CBM32, GH43_34, GH43_10, GH97, GH29 |
| PUL0575 | microarray, growth assay, gene deletion mutant and growth assay | raffinose | Enterococcus faecium | 20946531 A genetic element present on megaplasmids allows Enterococcus faecium to use raffinose as carbon source. Environ Microbiol. 2011 Feb;13(2):518-28. doi: 10.1111/j.1462-2920.2010.02355.x. Epub 2010 Oct 15. |
2011 Feb | degradation | 11 | 2 | GH13, GH13_18, GH13_31, GH13, GH36, GH4 |
| PUL0576 | growth assay | mucin, human milk oligosaccharide, O-glycan | Bifidobacterium bifidum | 20974960 Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging. Proc Natl Acad Sci U S A. 2010 Nov 9;107(45):19514-9. doi: 10.1073/pnas.1011100107. Epub 2010 Oct 25. |
2010 Nov 9 | degradation | 9 | 1 | GH112 |
| PUL0591 | growth assay, Northern Blot | N-acetylglucosamine | Bacillus subtilis | 23667565 The use of amino sugars by Bacillus subtilis: presence of a unique operon for the catabolism of glucosamine. PLoS One. 2013 May 8;8(5):e63025. doi: 10.1371/journal.pone.0063025. Print 2013. |
2013 | degradation | 4 | 1 | CE9 |
| PUL0602 | sequence homology analysis | xylan | Parageobacillus thermoglucosidasius | 26442136 Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park. Stand Genomic Sci. 2015 Oct 5;10:73. doi: 10.1186/s40793-015-0031-z. eCollection 2015. |
2015 | degradation | 26 | 6 | CBM22, GH10, GH39, GH67, GH10, GH52, CE4 |
| PUL0627 | sugar utilization assay, NMR, Smith degradation, mass spectrometry, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii LUH5543 | 33159946 Involvement of a multifunctional rhamnosyltransferase in the synthesis of three related Acinetobacter baumannii capsular polysaccharides, K55, K74 and K85. Int J Biol Macromol. 2021 Jan 1;166:1230-1237. doi: 10.1016/j.ijbiomac.2020.11.005. Epub 2020 Nov 4. |
2021 Jan 1 | biosynthesis | 21 | 1 | GT2 |
| PUL0628 | sugar utilization assay, NMR, Smith degradation, mass spectrometry, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii BAL_204 | 33159946 Involvement of a multifunctional rhamnosyltransferase in the synthesis of three related Acinetobacter baumannii capsular polysaccharides, K55, K74 and K85. Int J Biol Macromol. 2021 Jan 1;166:1230-1237. doi: 10.1016/j.ijbiomac.2020.11.005. Epub 2020 Nov 4. |
2021 Jan 1 | biosynthesis | 22 | 2 | GT2, GT2, GT2, GT2 |
| PUL0629 | sugar utilization assay, NMR, Smith degradation, mass spectrometry, sequence homology analysis | capsule polysaccharide | Acinetobacter baumannii BAL_309 | 33159946 Involvement of a multifunctional rhamnosyltransferase in the synthesis of three related Acinetobacter baumannii capsular polysaccharides, K55, K74 and K85. Int J Biol Macromol. 2021 Jan 1;166:1230-1237. doi: 10.1016/j.ijbiomac.2020.11.005. Epub 2020 Nov 4. |
2021 Jan 1 | biosynthesis | 22 | 1 | GT2, GT2 |
| PUL0631 | growth assay, sequence homology analysis | alginate | Pseudooceanicola algae Lw-13e | 33310406 Pseudooceanicola algae sp. nov., isolated from the marine macroalga Fucus spiralis, shows genomic and physiological adaptations for an algae-associated lifestyle. Syst Appl Microbiol. 2021 Jan;44(1):126166. doi: 10.1016/j.syapm.2020.126166. Epub 2020 Nov 27. |
2021 Jan | degradation | 8 | 1 | PL15, PL15_1 |
| PUL0654 | sequence homology analysis | alginate | Maribacter dokdonensis 62-1 | 33912144 CAZymes in Maribacter dokdonensis 62-1 From the Patagonian Shelf: Genomics and Physiology Compared to Related Flavobacteria and a Co-occurring Alteromonas Strain. Front Microbiol. 2021 Apr 12;12:628055. doi: 10.3389/fmicb.2021.628055. eCollection 2021. |
2021 | degradation | 38 | 8 | GH144, GH144, CE0, CE1, CBM6, GH3, PL6_1, PL6, PL12, PL6_1, PL6, PL17, PL17_2 |
| PUL0655 | sequence homology analysis | alginate | Maribacter dokdonensis 62-1 | 33912144 CAZymes in Maribacter dokdonensis 62-1 From the Patagonian Shelf: Genomics and Physiology Compared to Related Flavobacteria and a Co-occurring Alteromonas Strain. Front Microbiol. 2021 Apr 12;12:628055. doi: 10.3389/fmicb.2021.628055. eCollection 2021. |
2021 | degradation | 10 | 2 | PL7, PL7 |
| PUL0658 | qPCR, growth assay | beta-mannooligosaccharide | Faecalibacterium prausnitzii SL3/3 | 34061597 Human Gut Faecalibacterium prausnitzii Deploys a Highly Efficient Conserved System To Cross-Feed on beta-Mannan-Derived Oligosaccharides. mBio. 2021 Jun 29;12(3):e0362820. doi: 10.1128/mBio.03628-20. Epub 2021 Jun 1. |
2021 Jun 29 | degradation | 14 | 9 | GH36, CE2, CE17, GH113, GH1, GH130_2, GH130_1 |
| PUL0659 | qPCR, growth assay | beta-mannooligosaccharide | Faecalibacterium prausnitzii SL3/3 | 34061597 Human Gut Faecalibacterium prausnitzii Deploys a Highly Efficient Conserved System To Cross-Feed on beta-Mannan-Derived Oligosaccharides. mBio. 2021 Jun 29;12(3):e0362820. doi: 10.1128/mBio.03628-20. Epub 2021 Jun 1. |
2021 Jun 29 | degradation | 2 | 2 | GH3A, GH3B |
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