| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra028320 |
| Family | GH116 |
| Protein Properties | Length: 966 Molecular Weight: 108821 Isoelectric Point: 7.1237 |
| Chromosome | Chromosome/Scaffold: 01 Start: 18568622 End: 18574715 |
| Description | Beta-glucosidase, GBA2 type family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH116 | 550 | 912 | 0 |
| GRFLYLEGVEYVMWNTYDVHFYASYALLMLFPKIELNIQRDFAKAVLSEDTRKVKFLAEGNWGIRKVRGAVPHDLGMHDPWNEMNAYNIHDTSKWKDLNP KFVLQVYRDFAATGDHQFGIDVWPAVRAAMEYMEQFDRDNDDLIENDGFPDQTYDTWTVHGVSAYCGCLWLAALQAAAAMALQVGDKFFAELCKNKFLNA KAALEAKLWNGTYLNYDSGASSNSKSIQTDQLAGQWYTASSGLPPVFEEFKIRSTLQKIFDFNVMKTRGGRMGAVNGMHPDGKVDETCMQSREIWTGVTY AAAATMILSGMEEQGFTTAEGIFTAGWSEEGFGYWFQTPEGWTMDGHYRSLIYMRPLAIWGMQ | |||
| Full Sequence |
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| Protein Sequence Length: 966 Download |
| MVGPTLFHRR KHSWPPEEFI SKTTLQLLDF DSAAPPSHAW RRRLNCHANI LKEFTITFRE 60 AIKMVRLGIR LWSYVREEAS HGRKAPIDPF TKDNCRPSAS QGVPLGGMGS GSISRGFRGE 120 FKQWQITPGT CDPSPMMSNQ FSIFISRENV HKKYASVLAP GQHGSLGKSR DKGISSWGWN 180 LNGQHSTYHA LFPRAWTIYD GEPDPELKIS CRQISPFIPN NYRDSSLPAA VFVYTLVNTG 240 KERAKVSLVF TWAVSWHLIH FYYIMSRRAD VYQLCILQNS IGGTSHMSGG HVNEPFIGED 300 GVSGVLLHHK TCMGNPPVTF AICACETQNV NVTVLPCFGL SEDSFFTAKD MWETMEKDGK 360 FDQENFNSGP SMPSSPGDTI CAAVSASAWV EAHGKCTVSF ALSWPSPKVK FSKGSTYDRR 420 YTKFYGTSRR AAVDLVHDAL THYKRWEEEI EAWQNPILRD DRLPEWYKFT LFNELYFLVA 480 GGTVWIDSAS LHANGNGQRQ QSDLRNLDGK ANGIDGKEQQ NNLNNGDRNG IESNGLFVDT 540 SKADDEDDVG RFLYLEGVEY VMWNTYDVHF YASYALLMLF PKIELNIQRD FAKAVLSEDT 600 RKVKFLAEGN WGIRKVRGAV PHDLGMHDPW NEMNAYNIHD TSKWKDLNPK FVLQVYRDFA 660 ATGDHQFGID VWPAVRAAME YMEQFDRDND DLIENDGFPD QTYDTWTVHG VSAYCGCLWL 720 AALQAAAAMA LQVGDKFFAE LCKNKFLNAK AALEAKLWNG TYLNYDSGAS SNSKSIQTDQ 780 LAGQWYTASS GLPPVFEEFK IRSTLQKIFD FNVMKTRGGR MGAVNGMHPD GKVDETCMQS 840 REIWTGVTYA AAATMILSGM EEQGFTTAEG IFTAGWSEEG FGYWFQTPEG WTMDGHYRSL 900 IYMRPLAIWG MQWALTLPKA ILDGPKINMV DRVHMSPRSR RFSHNVKVVK HKAKCFGNCT 960 LSCSC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG4354 | COG4354 | 3.0e-26 | 102 | 487 | 394 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam12215 | GBA2_N | 3.0e-59 | 102 | 446 | 354 | + beta-Glucocerebrosidase 2 N terminal. This domain is found in bacteria, archaea and eukaryotes. This domain is typically between 320 to 354 amino acids in length. This domain is found associated with pfam04685. This domain is found in the protein beta-Glucocerebrosidase 2. It is found just after the extreme N terminus. This protein is located in the ER. The N terminal is thought to be the luminal domain while the C terminal is the cytosolic domain. The catalytic domain of GBA-2 is unknown. | ||
| COG4354 | COG4354 | 1.0e-66 | 547 | 915 | 387 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
| pfam04685 | DUF608 | 5.0e-151 | 550 | 913 | 368 | + Protein of unknown function, DUF608. This family represents a conserved region with a pankaryotic distribution in a number of uncharacterized proteins. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004348 | glucosylceramidase activity |
| GO:0006665 | sphingolipid metabolic process |
| GO:0016021 | integral to membrane |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB01359.1 | 0 | 1 | 965 | 1 | 937 | unnamed protein product [Arabidopsis thaliana] |
| RefSeq | NP_189060.2 | 0 | 1 | 965 | 1 | 950 | catalytic/ glucosylceramidase [Arabidopsis thaliana] |
| RefSeq | XP_002285674.1 | 0 | 1 | 965 | 1 | 978 | PREDICTED: similar to catalytic [Vitis vinifera] |
| RefSeq | XP_002303825.1 | 0 | 1 | 965 | 1 | 966 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518119.1 | 0 | 1 | 965 | 1 | 968 | conserved hypothetical protein [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO779860 | 279 | 692 | 966 | 0 |
| HO779860 | 150 | 544 | 693 | 0 |
| EX126394 | 285 | 620 | 904 | 0 |
| EX137918 | 287 | 502 | 788 | 0 |
| HO779860 | 67 | 441 | 506 | 7e-19 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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