| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra002009 |
| Family | GH51 |
| Protein Properties | Length: 622 Molecular Weight: 68883.5 Isoelectric Point: 4.9049 |
| Chromosome | Chromosome/Scaffold: 10 Start: 12244074 End: 12247433 |
| Description | alpha-L-arabinofuranosidase 2 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH51 | 229 | 604 | 0 |
| NGSIWFDQVSAMPVDTYKGHGFRNDLFQMMVDLKPRFIRFPGGCYVEGDSLSNAFQWKKTVGAWEERPGHFGDVWNYWTDDGLGHFEFFHVAGISHNDQV ETARIMPFVQEALDGIEFARGDANSTWGSVRAAMGHPKPFGLKYVAVGNEDCWQKYTYYKGNYLVFYNAIKKAYPDIKIISNCDGSSQPLDHPADYYDFH AFVSEYAAKSETDANKGNLLAALGEAGFLLGLEKNSDVVGMVSYAPLFVNTNDRRWIPDAIVFNSSHLYGTPSYWVQQFFTESSGATLLSSTMEGNSSYV EASAISFQSNGSDYIQIKAVNFANVTVELKVKMTGLESSNTKVSAKKKKVLTSASVMDENSFSNPQMIAPQETLVV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 622 Download |
| MDRKWCSLTF LTSICLILFL LGSYAAYEHF RRVDAREDNE KHYVTLQVEA SNATGRPIPE 60 TLFGIFFEEI NHAGAGGLWA ELVSNRGFEA GGQIIPSSIW PWSIIGDEST ISVVTDRSSC 120 FERNKIALRM EVLCNSSGCP SEGVGVYNPG YWGMNIEEGK KYKVTLYVRS TGDIDVSVSL 180 TSSNGSLTLA SEQIIALASE VSKWTKKEML LEANGTDDGA RLQLTTTKNG SIWFDQVSAM 240 PVDTYKGHGF RNDLFQMMVD LKPRFIRFPG GCYVEGDSLS NAFQWKKTVG AWEERPGHFG 300 DVWNYWTDDG LGHFEFFHVA GISHNDQVET ARIMPFVQEA LDGIEFARGD ANSTWGSVRA 360 AMGHPKPFGL KYVAVGNEDC WQKYTYYKGN YLVFYNAIKK AYPDIKIISN CDGSSQPLDH 420 PADYYDFHAF VSEYAAKSET DANKGNLLAA LGEAGFLLGL EKNSDVVGMV SYAPLFVNTN 480 DRRWIPDAIV FNSSHLYGTP SYWVQQFFTE SSGATLLSST MEGNSSYVEA SAISFQSNGS 540 DYIQIKAVNF ANVTVELKVK MTGLESSNTK VSAKKKKVLT SASVMDENSF SNPQMIAPQE 600 TLVVMPETFV LAPYSFSSFD I* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3534 | AbfA | 7.0e-23 | 249 | 382 | 142 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 3.0e-30 | 463 | 615 | 166 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 8.0e-34 | 463 | 615 | 166 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK50089.1 | 0 | 7 | 621 | 5 | 655 | AF372949_1 AT3g10740/T7M13_18 [Arabidopsis thaliana] |
| GenBank | AAO92261.1 | 0 | 7 | 621 | 5 | 655 | alpha-L-arabinofuranosidase [Arabidopsis thaliana] |
| RefSeq | NP_187685.1 | 0 | 7 | 621 | 5 | 655 | ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] |
| RefSeq | NP_197984.2 | 0 | 1 | 621 | 3 | 652 | ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] |
| RefSeq | XP_002523672.1 | 0 | 45 | 621 | 39 | 658 | Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4atw_F | 0.0000000009 | 248 | 378 | 47 | 172 | A Chain A, The Crystal Structure Of Arabinofuranosidase |
| PDB | 4atw_E | 0.0000000009 | 248 | 378 | 47 | 172 | A Chain A, The Crystal Structure Of Arabinofuranosidase |
| PDB | 4atw_D | 0.0000000009 | 248 | 378 | 47 | 172 | A Chain A, The Crystal Structure Of Arabinofuranosidase |
| PDB | 4atw_C | 0.0000000009 | 248 | 378 | 47 | 172 | A Chain A, The Crystal Structure Of Arabinofuranosidase |
| PDB | 4atw_B | 0.0000000009 | 248 | 378 | 47 | 172 | A Chain A, The Crystal Structure Of Arabinofuranosidase |
