| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra033408 |
| Family | GT14 |
| Protein Properties | Length: 1315 Molecular Weight: 147909 Isoelectric Point: 4.7259 |
| Chromosome | Chromosome/Scaffold: 10 Start: 3819127 End: 3825266 |
| Description | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT14 | 795 | 1050 | 0 |
| LAYLISGTKGDSHRMMRTLQAVYHPRNQYVLHLDLEAPPKERMELALSVKSDPIFSRMENVRVMSQSNLVTYKGPTMIACTLQAVAILLRESLHWDWFLN LSASDYPLVTQDDLLYVFSNMSRNVNFIENMQLTGWKLNQRAKSIIVDPGLYLSKKSDLAWTTQRRSLPTSFKLFTGSAWIMLTRSFLEYCIWGWDNFPR TILMYYTNFVSSPEGYFHTVLCNSKEFVNTAIGHDLHYIAWDNPPKQHPVSLSLKD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1315 Download |
| MVGFHEELPI DQDSKVKTFK DAVDFPSIDS YLDFDSCNWL GNNPSIEEFG VKDTDFDFFE 60 DDMEEIGQGG VENHQNTVLS ETVFEVKPEL CGGVTEDIEA EPKLCDDVAG EPAVKDVSAS 120 VDCPTMKKTD SEASSSSSSS SSSGSSSSSE EEESDDEEDS EEEEEEEEKM VIVKEDGVAG 180 ELEEGEIESA DEVEEDSDDD DEDEVNEMIA WSNDEDDDLG LQTKDPIRSK NELKDLPPVP 240 AVDVSLEPHH VTLPVGVVLS VMSTQVIVEG MEQHSPLTEG SILWITERRT PLGLVDEIFG 300 PVKCPYYIVR FNSESEVPEG VSQGTPVSFV ADFAQHILNI KELQKKGYDA SGDNDEEIPD 360 ELEFSDDEKE AEYRRMQKME KRGMGNDQRN GNARNKKKKN RDHHGSSSSL SSNRSDPQMG 420 GPPVSNHHQP RPQMDGFPPN NGSPWRPQSN QQNQFQLPPM GMPNLGPMQM PMMGMQNQNQ 480 MMFPPQFNGG QMPMPMPMPG GLNYFPGQGS APWPALNCFN QQQFGGMGRG IQHPQLPNMF 540 ASQGFQMQQP QSQMQRPPQF QMQPQFQPRP QYQMMNSNRP PSPMNPQFQM QPQSEIRPPS 600 QVPQHSPTNP ESPVQEQSQG FSNGQSSERG RGHRGGRGRG RVSSSSLCPL PKLNQKFEFF 660 FLSRLSLSAV VFIGDVSCFF KTTLISCLNW VSQGMRKLYR KLASFKDPFT RAKRHVSSSH 720 SGFRSFSDRR WMFPFVAASI ISITLLMLSI SGFYSEEEES PLPSDAVSKP TNDDYFVESS 780 FLKSNPDVNP DLPRLAYLIS GTKGDSHRMM RTLQAVYHPR NQYVLHLDLE APPKERMELA 840 LSVKSDPIFS RMENVRVMSQ SNLVTYKGPT MIACTLQAVA ILLRESLHWD WFLNLSASDY 900 PLVTQDDLLY VFSNMSRNVN FIENMQLTGW KLNQRAKSII VDPGLYLSKK SDLAWTTQRR 960 SLPTSFKLFT GSAWIMLTRS FLEYCIWGWD NFPRTILMYY TNFVSSPEGY FHTVLCNSKE 1020 FVNTAIGHDL HYIAWDNPPK QHPVSLSLKD FDNMVKSKAP FARKFHKNDP VLDKIDRELL 1080 GRTHRFSPGG WCVGRSDNGS DPCSVQGNDS VLRPGPGAVR LQELVQTLSS EDQHTSLMAF 1140 REVRPCILSL GCAPLNVYGK CVSVSHARKL FDEIPQRNTV VWKAMISHYT HCGKIREAVE 1200 LYEAMDVMPN ESSFNAIIKG LVGTEDGSYK AIGFYRKMIE FRFKPSLITL DHYSCLVDVL 1260 SRVWRLEEAC KVIQPMPEKP IGIVEDRAGE SGELCVVGEI YMSVERQEDG GRET* 1320 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03081 | PLN03081 | 2.0e-9 | 1136 | 1281 | 158 | + pentatricopeptide (PPR) repeat-containing protein; Provisional | ||
| PLN03081 | PLN03081 | 2.0e-11 | 1153 | 1280 | 137 | + pentatricopeptide (PPR) repeat-containing protein; Provisional | ||
| pfam04410 | Gar1 | 3.0e-42 | 233 | 381 | 151 | + Gar1/Naf1 RNA binding region. Gar1 is a small nucleolar RNP that is required for pre-mRNA processing and pseudouridylation. It is co-immunoprecipitated with the H/ACA families of snoRNAs. This family represents the conserved central region of Gar1. This region is necessary and sufficient for normal cell growth, and specifically binds two snoRNAs snR10 and snR30. This region is also necessary for nucleolar targeting, and it is thought that the protein is co-transported to the nucleolus as part of a nucleoprotein complex. In humans, Gar1 is also component of telomerase in vivo. Naf1 is an essentail protein that plays a role in ribosome biogenesis, modification of spliceosomal small nuclear RNAs and telomere synthesis, and is homologous to Gar1. | ||
| pfam02485 | Branch | 1.0e-77 | 795 | 1055 | 265 | + Core-2/I-Branching enzyme. This is a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme and core-2 branching enzyme . I-branching enzyme is responsible for the production of the blood group I-antigen during embryonic development. Core-2 branching enzyme forms crucial side-chain branches in O-glycans. | ||
| PLN03183 | PLN03183 | 0 | 786 | 1131 | 347 | + acetylglucosaminyltransferase family protein; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008375 | acetylglucosaminyltransferase activity |
| GO:0016020 | membrane |
| GO:0030515 | snoRNA binding |
| GO:0031120 | snRNA pseudouridine synthesis |
| GO:0042254 | ribosome biogenesis |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO64742.1 | 0 | 1 | 632 | 1 | 776 | At1g03530 [Arabidopsis thaliana] |
| RefSeq | NP_001077453.1 | 0 | 782 | 1132 | 1 | 351 | glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein [Arabidopsis thaliana] |
| RefSeq | NP_171851.1 | 0 | 695 | 1132 | 1 | 440 | glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein [Arabidopsis thaliana] |
| RefSeq | NP_171852.2 | 0 | 1 | 632 | 1 | 776 | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) [Arabidopsis thaliana] |
| RefSeq | NP_192243.1 | 0 | 695 | 1132 | 1 | 441 | glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2eqn_A | 0.0000001 | 235 | 317 | 8 | 89 | A Chain A, Solution Structure Of The Naf1 Domain Of Hypothetical Protein Bc008207 [homo Sapie |
| PDB | 3otk_D | 0.0000002 | 811 | 986 | 101 | 263 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 3otk_C | 0.0000002 | 811 | 986 | 101 | 263 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 3otk_B | 0.0000002 | 811 | 986 | 101 | 263 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
| PDB | 3otk_A | 0.0000002 | 811 | 986 | 101 | 263 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
