| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra034586 |
| Family | GH10 |
| Protein Properties | Length: 575 Molecular Weight: 65571.6 Isoelectric Point: 9.6759 |
| Chromosome | Chromosome/Scaffold: 08 Start: 12689356 End: 12692120 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 220 | 479 | 0 |
| RKLGFPFGCEVEKNILGNHAYQSWFTKRFTVTTFANEMKWYSTEVVRGKEDYSIADKMFRFFKKHGVAVRGHNIVWSDPKYQTKWLNSLSGREFYNAVKQ RVSSVASRYKGQLEGWDVVNENLHFSYFEKKMGPKASRNIFKMAQAFDPTTTKFINEYNTLEEPRDLDSSPAKFLKKLRELKSIVVRGNISLGIGLESHF KTPNIPFMRSALDILGATDLPIWLTEVDVEAPKNVQAKYFEQVLREGHAHPRVKGIVTWA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 575 Download |
| MKRLLLQLLA LWSFSLSRCE STFVPYDYSA TCLDKPLKPQ YNGGIIVNPD LRDGPQAWLP 60 FGNAKIEFKD IGHDKFVVAR ERKQPHDSVS QKVHLEKGRL YTFSAWLQVN NGKAPVSAVF 120 KTNGEYKHAG SVIAESKCWS MLKGGLTVDE SGPGELYFES NDTRVEIWVD SVSLQPFTQE 180 EWKSHQDHNI HKERKRTVRI RVVNSKGEPV QKASLSIEQR KLGFPFGCEV EKNILGNHAY 240 QSWFTKRFTV TTFANEMKWY STEVVRGKED YSIADKMFRF FKKHGVAVRG HNIVWSDPKY 300 QTKWLNSLSG REFYNAVKQR VSSVASRYKG QLEGWDVVNE NLHFSYFEKK MGPKASRNIF 360 KMAQAFDPTT TKFINEYNTL EEPRDLDSSP AKFLKKLREL KSIVVRGNIS LGIGLESHFK 420 TPNIPFMRSA LDILGATDLP IWLTEVDVEA PKNVQAKYFE QVLREGHAHP RVKGIVTWAG 480 YSPTGCYRMC LTDGNFKNLP TGDVVDKLLH EWGGFRRQTK GLTDADGFFE ASLFHGDYDF 540 KIDHPLTNSK ASHSFKLVSD VSSNTQPSSF VFRL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 0.0001 | 43 | 163 | 132 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 3.0e-29 | 246 | 478 | 254 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 3.0e-46 | 224 | 478 | 274 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 6.0e-77 | 257 | 505 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA19866.1 | 0 | 27 | 574 | 119 | 669 | putative protein [Arabidopsis thaliana] |
| EMBL | CAA19868.1 | 0 | 36 | 574 | 22 | 574 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_195109.2 | 0 | 1 | 574 | 1 | 576 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_195110.3 | 0 | 17 | 574 | 16 | 576 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | NP_195112.2 | 0 | 18 | 574 | 17 | 576 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 2e-27 | 226 | 505 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1xas_A | 1e-23 | 212 | 478 | 2 | 266 | A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The Streptomyces Lividans Xylanase A, A Member Of The F Family Of Beta-1,4-D-Glycanses |
| PDB | 2g4f_B | 4e-23 | 212 | 479 | 2 | 267 | A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The Streptomyces Lividans Xylanase A, A Member Of The F Family Of Beta-1,4-D-Glycanses |
| PDB | 2g4f_A | 4e-23 | 212 | 479 | 2 | 267 | A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The Streptomyces Lividans Xylanase A, A Member Of The F Family Of Beta-1,4-D-Glycanses |
| PDB | 2g3j_A | 4e-23 | 212 | 479 | 2 | 267 | A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The Streptomyces Lividans Xylanase A, A Member Of The F Family Of Beta-1,4-D-Glycanses |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
