Basic Information | |
---|---|
Species | Citrus clementina |
Cazyme ID | Ciclev10028372m |
Family | CBM43 |
Protein Properties | Length: 468 Molecular Weight: 49445 Isoelectric Point: 6.2395 |
Chromosome | Chromosome/Scaffold: 8 Start: 4903916 End: 4909930 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 379 | 460 | 3.3e-33 |
WCVPKAGISDAQLQASLDYACSQGIDCSPIQPGGACFEPNTVVSHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGC | |||
GH17 | 31 | 346 | 0 |
IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISND QNLISQLLPAMANMQNALNAASLGGKIKVSTVHAMSVLAQSDPPSSGSFIRQDTMRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRV DSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSE RSFGLFKPDLSAAYDV |
Full Sequence |
---|
Protein Sequence Length: 468 Download |
MAKANSNSSL FLFVSLLLFQ VLHFSSSQSF IGVNYGQVAD NLPPPAATAK LLQSTSIQKL 60 RLYGADPAII KALANTGVGI VIGASSGDIP ALASDPNAAT QWINSNVLPF YPASKIILIT 120 VGNEVMISND QNLISQLLPA MANMQNALNA ASLGGKIKVS TVHAMSVLAQ SDPPSSGSFI 180 RQDTMRGILQ FLKDHGSPFT INPYPFFAYQ SDPRPETLAF CLFQPNAGRV DSGTGIKYMN 240 MFDAQVDAVH SALNAMGFKD VEIVVAETGW PYRGDPNEVG PSVENAKAYN GNLIAHLRSM 300 AGTPLMPGKS VDTYIFALYD EDLKPGPTSE RSFGLFKPDL SAAYDVGISK SSQTPSAPVT 360 PSTPKTPTTP SPKPTAAGWC VPKAGISDAQ LQASLDYACS QGIDCSPIQP GGACFEPNTV 420 VSHAAFAMNL YYQTSAKNPW NCDFSKTATL TSQNPSYNGC VYPSGGT* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 2.0e-6 | 59 | 339 | 288 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 8.0e-23 | 379 | 449 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 9.0e-41 | 379 | 462 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 9.0e-90 | 31 | 346 | 319 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95331.1 | 0 | 12 | 465 | 5 | 454 | unknown [Populus trichocarpa] |
GenBank | ABK95837.1 | 0 | 12 | 467 | 5 | 452 | unknown [Populus trichocarpa] |
EMBL | CBI32582.1 | 0 | 27 | 463 | 55 | 488 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002284340.1 | 0 | 27 | 463 | 55 | 488 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002509479.1 | 0 | 22 | 467 | 19 | 460 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 31 | 346 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 31 | 346 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 31 | 346 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3ur8_B | 0 | 31 | 349 | 3 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3ur8_A | 0 | 31 | 349 | 3 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |