Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.005G243100.4 |
Family | CBM43 |
Protein Properties | Length: 324 Molecular Weight: 34470.6 Isoelectric Point: 5.2519 |
Chromosome | Chromosome/Scaffold: 05 Start: 62378145 End: 62385032 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 235 | 316 | 9.4e-34 |
WCVPKAGISDAQLQSSLDYACGQGIDCSPIQPGGACFEPNTVASHAAYAMNLYYQNSAKNPWNCDFSQTATLTSQNPTYNNC | |||
GH17 | 1 | 208 | 0 |
MQNMQNAINGASLGGKIKVSTVHSMAVLGQSDPPSSGLFSPSYQPALKGLLQFHKDNGSPFAINPYPFFAYQSDSRPETLAFCLFQPNAGRVDSGNGIKY MNMFDAQVDSVHSALSAMGFKDVEIMVAETGWPYSGDSNEVGPSIENAKAYNGNLIAHLKSMVGTPLMPGKSVDTYLFALYDEDLKPGPGSERAFGLYKS DLSMTYDV |
Full Sequence |
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Protein Sequence Length: 324 Download |
MQNMQNAING ASLGGKIKVS TVHSMAVLGQ SDPPSSGLFS PSYQPALKGL LQFHKDNGSP 60 FAINPYPFFA YQSDSRPETL AFCLFQPNAG RVDSGNGIKY MNMFDAQVDS VHSALSAMGF 120 KDVEIMVAET GWPYSGDSNE VGPSIENAKA YNGNLIAHLK SMVGTPLMPG KSVDTYLFAL 180 YDEDLKPGPG SERAFGLYKS DLSMTYDVGI SKSSQTPPTP KTPVTPQPKP TATGWCVPKA 240 GISDAQLQSS LDYACGQGID CSPIQPGGAC FEPNTVASHA AYAMNLYYQN SAKNPWNCDF 300 SQTATLTSQN PTYNNCIYPG GST* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 1.0e-5 | 123 | 201 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 8.0e-23 | 235 | 305 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 7.0e-40 | 235 | 318 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-55 | 1 | 208 | 208 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95331.1 | 0 | 1 | 322 | 134 | 455 | unknown [Populus trichocarpa] |
GenBank | ABK95837.1 | 0 | 1 | 323 | 133 | 452 | unknown [Populus trichocarpa] |
EMBL | CAN61862.1 | 0 | 1 | 320 | 158 | 478 | hypothetical protein [Vitis vinifera] |
EMBL | CBI32582.1 | 0 | 1 | 320 | 169 | 489 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002509479.1 | 0 | 1 | 323 | 138 | 460 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 5.00264e-43 | 224 | 322 | 1 | 100 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 3ur8_B | 1e-38 | 1 | 211 | 113 | 315 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 3ur8_A | 1e-38 | 1 | 211 | 113 | 315 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 3ur7_B | 1e-38 | 1 | 211 | 113 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 1e-38 | 1 | 211 | 113 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW226750 | 279 | 22 | 300 | 0 |
DY293193 | 323 | 3 | 319 | 0 |
HO781349 | 321 | 1 | 321 | 0 |
HO796302 | 321 | 1 | 321 | 0 |
EX255941 | 310 | 14 | 322 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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