Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.001G240000.2 |
Family | CBM43 |
Protein Properties | Length: 458 Molecular Weight: 49704.2 Isoelectric Point: 8.1842 |
Chromosome | Chromosome/Scaffold: 01 Start: 25098555 End: 25100928 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 370 | 448 | 1.8e-31 |
WCVPKSDASDDALQKNIDYVCSNGVDCKPIQQGGPCFVPDTVKSHASYAMNAFYQASGRHDYDCDFSHTGVLTSIDPSK | |||
GH17 | 27 | 339 | 0 |
VGVNYGTVANNLPSPSQVASFLKTQTTIDRVKIFDTNPDILRAFANTGISVTVTVGNGDIPSLAKLPAAQSWIAANILPFHPQTSIKYIAVGNEVLATSD KVLIAHTLPAMKALTSALELANITTIHVATPHSLGILSSSEPPSTGRFRKGYDQRIFAPFLDYHRKTKSPFMVNPYPYFGFKAETLNYALFKPNSGVFDA ATGNNYTNMFDAQLDAVYSAMKRLGYGDVDIVVAETGWPSVGDPNQPGVSMENAISYNKNLVKHVNSGKGTPLMPNRTFETYVFSLFNENLKPSVSERNF GLFKPDLTPVYDV |
Full Sequence |
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Protein Sequence Length: 458 Download |
MAKPRTLFLL LLTFYYHFSS SSAAYTVGVN YGTVANNLPS PSQVASFLKT QTTIDRVKIF 60 DTNPDILRAF ANTGISVTVT VGNGDIPSLA KLPAAQSWIA ANILPFHPQT SIKYIAVGNE 120 VLATSDKVLI AHTLPAMKAL TSALELANIT TIHVATPHSL GILSSSEPPS TGRFRKGYDQ 180 RIFAPFLDYH RKTKSPFMVN PYPYFGFKAE TLNYALFKPN SGVFDAATGN NYTNMFDAQL 240 DAVYSAMKRL GYGDVDIVVA ETGWPSVGDP NQPGVSMENA ISYNKNLVKH VNSGKGTPLM 300 PNRTFETYVF SLFNENLKPS VSERNFGLFK PDLTPVYDVG ILRDDKALAP TPGTAADAPS 360 SSSPGRQRQW CVPKSDASDD ALQKNIDYVC SNGVDCKPIQ QGGPCFVPDT VKSHASYAMN 420 AFYQASGRHD YDCDFSHTGV LTSIDPSKLS WPSSSPR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0001 | 39 | 332 | 307 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-24 | 369 | 440 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-38 | 369 | 447 | 79 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 4.0e-93 | 27 | 339 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95730.1 | 0 | 9 | 447 | 13 | 441 | unknown [Populus trichocarpa] |
RefSeq | XP_002283647.1 | 0 | 21 | 447 | 22 | 439 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002298356.1 | 0 | 1 | 457 | 1 | 457 | glycoside hydrolase [Populus trichocarpa] |
RefSeq | XP_002312097.1 | 0 | 9 | 447 | 13 | 441 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532848.1 | 0 | 20 | 447 | 18 | 438 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 27 | 339 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 27 | 339 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 27 | 339 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_D | 0 | 27 | 339 | 2 | 313 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_C | 0 | 27 | 339 | 2 | 313 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |