Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.008G055900.1 |
Family | CBM43 |
Protein Properties | Length: 449 Molecular Weight: 49269.2 Isoelectric Point: 8.9344 |
Chromosome | Chromosome/Scaffold: 08 Start: 3305969 End: 3309275 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 364 | 446 | 1.3e-34 |
WCVPKADATDKALQANIDYVCSQGMDCKPIQAGGACFSPNNIRSHASYIMNSYYQSHGSNDFNCDFSQTAVLTTSDPSHGTCK | |||
GH17 | 29 | 342 | 0 |
IGVNYGTLANNLPSPSQVASFLKTQTTIDSIKIFDTNPDILRAFANSNITVTVTVGNGDIPALVDVNAASQWVANNIKPYYPQTRIKLIAVGNEILFTGN KEWISRLVPCMKSLHQALVHAGIKDVQVSTPHTLGILHNSVQPSAARIRPGYDRVIFAPMLQFLRQTKSPLMVNPYPYFSYSPSMENYILFKPNRGVHDT NTNITYTNMFVAMMDAVYSAIKAMGYGDLDIVVAESGWPSLGDPNQPMCTVENAVSYNKNMIKVVTSGNGTPLMPKRRFQTYVFSLFNENLKPGSTAERN WGLFRPEFTPVYDV |
Full Sequence |
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Protein Sequence Length: 449 Download |
MATITTTSIT TALLIISTLL HFSTTAFAIG VNYGTLANNL PSPSQVASFL KTQTTIDSIK 60 IFDTNPDILR AFANSNITVT VTVGNGDIPA LVDVNAASQW VANNIKPYYP QTRIKLIAVG 120 NEILFTGNKE WISRLVPCMK SLHQALVHAG IKDVQVSTPH TLGILHNSVQ PSAARIRPGY 180 DRVIFAPMLQ FLRQTKSPLM VNPYPYFSYS PSMENYILFK PNRGVHDTNT NITYTNMFVA 240 MMDAVYSAIK AMGYGDLDIV VAESGWPSLG DPNQPMCTVE NAVSYNKNMI KVVTSGNGTP 300 LMPKRRFQTY VFSLFNENLK PGSTAERNWG LFRPEFTPVY DVGIMRNGQS SRPTPPSPTK 360 SKKWCVPKAD ATDKALQANI DYVCSQGMDC KPIQAGGACF SPNNIRSHAS YIMNSYYQSH 420 GSNDFNCDFS QTAVLTTSDP SHGTCKYN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 8.0e-5 | 22 | 332 | 323 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 3.0e-26 | 364 | 434 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-43 | 364 | 447 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-87 | 29 | 342 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95730.1 | 0 | 1 | 448 | 1 | 448 | unknown [Populus trichocarpa] |
RefSeq | XP_002283647.1 | 0 | 1 | 447 | 1 | 445 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002312097.1 | 0 | 1 | 448 | 1 | 448 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530862.1 | 0 | 1 | 441 | 1 | 439 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
RefSeq | XP_002530863.1 | 0 | 5 | 447 | 3 | 456 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghs_B | 0 | 29 | 342 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 29 | 342 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 2cyg_A | 0 | 29 | 342 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 29 | 347 | 3 | 317 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 29 | 347 | 3 | 317 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |