Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.015G010100.1 |
Family | CBM43 |
Protein Properties | Length: 467 Molecular Weight: 50460.5 Isoelectric Point: 5.3812 |
Chromosome | Chromosome/Scaffold: 15 Start: 673277 End: 675584 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 374 | 450 | 7.8e-21 |
CLPKTGADVEALQRNIDYVCGLEMQYCTPIQEGGECFLPTVIRAHAAFAMNACYQGTGKNDFDCDFETGAISTVDPS | |||
GH17 | 33 | 347 | 0 |
IGVNYGTLANNLPPPAQVAHFLLESTIINRVRLFDASTEILRAFAHTGIAVTVTVTNDQIPHLTNIGFAQEWLKSNVQPHVRTTNIVRILVGNEVISTAN KLLIASLVPAMQALHAALVDASLDSRIKISTPHSLGILSSSSPPSGGKFRQGYDTHVLKPVLSFLRATNSPFMINPYPFFGSSPETLDYALFRTSSGVFD ENTKLSYTNMLDAQLDAVFSAMKLLGFSDIEIVISETGWPSLGDSSQVGVDAESAAQYNRNLMQHVTSGAGTPLMPNRTFETYIFALFNEDLKPGPTCER NFGLFLPDMTPVYDI |
Full Sequence |
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Protein Sequence Length: 467 Download |
MENALATFSA STVTTILLLA ASTLFIQGVE GSIGVNYGTL ANNLPPPAQV AHFLLESTII 60 NRVRLFDAST EILRAFAHTG IAVTVTVTND QIPHLTNIGF AQEWLKSNVQ PHVRTTNIVR 120 ILVGNEVIST ANKLLIASLV PAMQALHAAL VDASLDSRIK ISTPHSLGIL SSSSPPSGGK 180 FRQGYDTHVL KPVLSFLRAT NSPFMINPYP FFGSSPETLD YALFRTSSGV FDENTKLSYT 240 NMLDAQLDAV FSAMKLLGFS DIEIVISETG WPSLGDSSQV GVDAESAAQY NRNLMQHVTS 300 GAGTPLMPNR TFETYIFALF NEDLKPGPTC ERNFGLFLPD MTPVYDIGIL RSTAKSSIPT 360 NPALVPRPKG KTRCLPKTGA DVEALQRNID YVCGLEMQYC TPIQEGGECF LPTVIRAHAA 420 FAMNACYQGT GKNDFDCDFE TGAISTVDPS CEYILKTSVH AVDYLQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 4.0e-14 | 374 | 439 | 75 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-23 | 374 | 453 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-86 | 33 | 347 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23036.1 | 0 | 11 | 454 | 3 | 459 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002271991.1 | 0 | 11 | 450 | 3 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318439.1 | 0 | 1 | 453 | 1 | 463 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321390.1 | 0 | 32 | 450 | 1 | 419 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526252.1 | 0 | 1 | 453 | 1 | 469 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 33 | 347 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 33 | 347 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 33 | 347 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3ur8_B | 0 | 33 | 347 | 3 | 312 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3ur8_A | 0 | 33 | 347 | 3 | 312 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |