Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s150_19V6.1 |
Family | CBM43 |
Protein Properties | Length: 517 Molecular Weight: 55211.7 Isoelectric Point: 7.6878 |
Chromosome | Chromosome/Scaffold: 150 Start: 259628 End: 263047 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 431 | 513 | 6.6e-32 |
WCVAKPGSGESEVANALNFACGEGGADCGEIQAGGACYSPNTVLSHASFAFNTYYQKMGRNYWNCYFGGTSVITITDPSYSGC | |||
GH17 | 38 | 353 | 0 |
VGVNYGTLGNNLPSSAQVAQLLLSTSLRNVKIYNADKAIMEAFANTNIKLVVGIGTESIPLLASSSTAAQAWVQSNIAAYVPGTQITALAVGNEVFTTSP QMASQLVPAMVNIHTALVNLKLDYIKVSTPHNLQVLQKSFPPSSGAFRANITNEVKSLLAFLSATSSPIMVNFYPYFAYRDDPKNVSLNYSLFQPNTGVT DVNTGLHYNNMLDAQLDSVYSAMERFGYHNIPVLISETGWPSSGDPTEIAVSATNAQIYNQNLIKYVTSNKGTPLRPSTSVDAYIFALFNENMKPGPGSE RFFGLFNPDKSIVYNL |
Full Sequence |
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Protein Sequence Length: 517 Download |
MDKAMRTSMH GRSCLKLAIF VVLGCSCFSF AVGTGGTVGV NYGTLGNNLP SSAQVAQLLL 60 STSLRNVKIY NADKAIMEAF ANTNIKLVVG IGTESIPLLA SSSTAAQAWV QSNIAAYVPG 120 TQITALAVGN EVFTTSPQMA SQLVPAMVNI HTALVNLKLD YIKVSTPHNL QVLQKSFPPS 180 SGAFRANITN EVKSLLAFLS ATSSPIMVNF YPYFAYRDDP KNVSLNYSLF QPNTGVTDVN 240 TGLHYNNMLD AQLDSVYSAM ERFGYHNIPV LISETGWPSS GDPTEIAVSA TNAQIYNQNL 300 IKYVTSNKGT PLRPSTSVDA YIFALFNENM KPGPGSERFF GLFNPDKSIV YNLGIVTNTY 360 PPISATPPYT SPISPTPPVV YPPPQPSLPP PVYSPPVPPA NIYPTPPTPP VLTPSPPYYA 420 PVQSGNPGKT WCVAKPGSGE SEVANALNFA CGEGGADCGE IQAGGACYSP NTVLSHASFA 480 FNTYYQKMGR NYWNCYFGGT SVITITDPSY SGCRFH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 1.0e-5 | 206 | 347 | 145 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 3.0e-21 | 430 | 500 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-39 | 430 | 515 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-91 | 50 | 353 | 305 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK24319.1 | 0 | 38 | 516 | 40 | 489 | unknown [Picea sitchensis] |
GenBank | ABK25242.1 | 0 | 38 | 516 | 40 | 489 | unknown [Picea sitchensis] |
RefSeq | XP_001752749.1 | 0 | 36 | 509 | 7 | 433 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001761806.1 | 0 | 34 | 511 | 30 | 453 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001772420.1 | 0 | 1 | 516 | 1 | 516 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghs_B | 0 | 38 | 353 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 38 | 353 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 2cyg_A | 0 | 38 | 353 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 38 | 353 | 2 | 313 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 38 | 353 | 2 | 313 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |