Basic Information | |
---|---|
Species | Fragaria vesca |
Cazyme ID | mrna12825.1-v1.0-hybrid |
Family | CBM43 |
Protein Properties | Length: 710 Molecular Weight: 77352.8 Isoelectric Point: 5.8544 |
Chromosome | Chromosome/Scaffold: 7 Start: 20353886 End: 20359219 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 381 | 456 | 7.2e-27 |
CLPKNGADTEALQKNIDYVCGLGLDCGPIKQGGPCFMPNTVRAHAAYAMNIYYQAMGRNGYDCDFEQTGATTTVDP | |||
GH17 | 34 | 348 | 0 |
IGVNYGTVANDLPPPSQVAHFLLQSTIINRVRLFDTNPQILQAFAHSGIPLTITVPNDQIPHFTKLRFAQNWLNTNVIPYTPATNIVRILLGNEVLSTTN KLFIGNLVPAMQTLHMALVDASLDRQIKVSTPHSLGILSSSSPPSSGKFRQGYDTHVLKPLLTFLRVTKAPFMVNPYPYFGYSGDTLDYALFRPNAGVVD PNTKLLYTNMLDAQLDAIYSALKVVGFADLEIVIAETGWPSKGDAGQVGVDLESAADYNQNLIRHMTSGNGTPLMPNRTFETYIFALFNENLKPGPTSER NFGLFRPDMTPVYNV |
Full Sequence |
---|
Protein Sequence Length: 710 Download |
MENRRPDITL TRGSTIVLLF LASIFNVQGV QGSIGVNYGT VANDLPPPSQ VAHFLLQSTI 60 INRVRLFDTN PQILQAFAHS GIPLTITVPN DQIPHFTKLR FAQNWLNTNV IPYTPATNIV 120 RILLGNEVLS TTNKLFIGNL VPAMQTLHMA LVDASLDRQI KVSTPHSLGI LSSSSPPSSG 180 KFRQGYDTHV LKPLLTFLRV TKAPFMVNPY PYFGYSGDTL DYALFRPNAG VVDPNTKLLY 240 TNMLDAQLDA IYSALKVVGF ADLEIVIAET GWPSKGDAGQ VGVDLESAAD YNQNLIRHMT 300 SGNGTPLMPN RTFETYIFAL FNENLKPGPT SERNFGLFRP DMTPVYNVGV LRHTASSSTP 360 GNESPSPKQT PSPLHAGKQY CLPKNGADTE ALQKNIDYVC GLGLDCGPIK QGGPCFMPNT 420 VRAHAAYAMN IYYQAMGRNG YDCDFEQTGA TTTVDPGRFV RATANTAPLH SKAEEADAWQ 480 TIAQAWQKLG AMPPEDAMEK YLDIVSELYP TWADGLIVKS KGGDGSSGGN DSKGPMGPVF 540 STFVYEEGSE IDFKMDAIHA FAREGEVDNL LKCIDSGVSV DTKGLVLPLS CCAALLKVAL 600 LMNQLLGAVS CYEPDMKLNP YSEGRTPLHW AVDRGHLHMA EMLVSRNADV NAKDNEGQTA 660 LHYAAVCDRE GIAEYLVKKN ADTNVKDNDG NSPSDLCESK WSWLQRAKE* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00204 | ANK | 1.0e-14 | 623 | 677 | 55 | + ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. | ||
cd00204 | ANK | 2.0e-22 | 622 | 693 | 72 | + ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. | ||
cd00204 | ANK | 9.0e-23 | 622 | 693 | 72 | + ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. | ||
smart00768 | X8 | 5.0e-33 | 379 | 456 | 78 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-90 | 34 | 348 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005515 | protein binding |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 34 | 348 | 1 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 34 | 348 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 34 | 348 | 1 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_D | 0 | 34 | 348 | 2 | 313 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_C | 0 | 34 | 348 | 2 | 313 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |