Basic Information | |
---|---|
Species | Fragaria vesca |
Cazyme ID | mrna20426.1-v1.0-hybrid |
Family | CBM43 |
Protein Properties | Length: 610 Molecular Weight: 64684.4 Isoelectric Point: 7.278 |
Chromosome | Chromosome/Scaffold: 5 Start: 3695552 End: 3700411 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 475 | 557 | 1.8e-31 |
WCVPKTSGVSDAQLQANLDYACGHGIDCSPIQPGGACFDPNTVASHAAYAMNLYYHTVGTDPMNCDFSQTATLTSTNPSYNAC | |||
GH17 | 119 | 435 | 0 |
IGVNYGQVADNLPPPSSTAKLLQSTSIMQVRLYGSDPDVIKALANTGIGIVIGIANGDIPSLAADPNAAAQWINSHVVPFYPSSKITLINVGNEVLLSND QGLISQLLPAMRNVQSALSAASLGGKVRVSTVHAMTVLSQSDPPSSGRFNPGMLDVLKGLLAFQRDNASPFAVNPYPFFAYQSDPRPETLAFCLFQPNAG RVDSGSGIKYMNMFDAQVDAVKSALNAIGFNDIDILVAETGWPYHGDSNEVGPSVENAKAYNGNLIQHLRSMVGTPLIPGKPVETYIFALYDEDLKPGPA SERSFGLFKPDLSPTYD |
Full Sequence |
---|
Protein Sequence Length: 610 Download |
MAPSFLPDPI APVQSRSATR PNQSSSLPDL HIMIACLHLQ NQVTRLIQAS ICHFKSQFTT 60 AFKPKTAAAF NPQFASSSQS VAAKNQKQLA LTPMASLTSH LPIFLFLTAL ISSESQSFIG 120 VNYGQVADNL PPPSSTAKLL QSTSIMQVRL YGSDPDVIKA LANTGIGIVI GIANGDIPSL 180 AADPNAAAQW INSHVVPFYP SSKITLINVG NEVLLSNDQG LISQLLPAMR NVQSALSAAS 240 LGGKVRVSTV HAMTVLSQSD PPSSGRFNPG MLDVLKGLLA FQRDNASPFA VNPYPFFAYQ 300 SDPRPETLAF CLFQPNAGRV DSGSGIKYMN MFDAQVDAVK SALNAIGFND IDILVAETGW 360 PYHGDSNEVG PSVENAKAYN GNLIQHLRSM VGTPLIPGKP VETYIFALYD EDLKPGPASE 420 RSFGLFKPDL SPTYDAGLSK SSQTPSTPSV TPSPKPTPST PSVTPSPKPA TSSKWCVPKT 480 SGVSDAQLQA NLDYACGHGI DCSPIQPGGA CFDPNTVASH AAYAMNLYYH TVGTDPMNCD 540 FSQTATLTST NPSYNACVYP GGGSSSLPVA ATKMNEISND GFSKVRTGSS IRNKILVYMF 600 LFLIYSLSL* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 1.0e-14 | 117 | 429 | 326 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 1.0e-20 | 475 | 546 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-38 | 475 | 559 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-95 | 119 | 435 | 317 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 119 | 435 | 1 | 309 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 119 | 435 | 1 | 303 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 119 | 435 | 1 | 303 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3ur8_B | 0 | 119 | 434 | 3 | 310 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3ur8_A | 0 | 119 | 434 | 3 | 310 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
Sequence Alignments (This image is cropped. Click for full image.) |
---|