Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna26604.1-v1.0-hybrid |
Family | CBM43 |
Protein Properties | Length: 307 Molecular Weight: 32441.2 Isoelectric Point: 6.8035 |
Chromosome | Chromosome/Scaffold: 7 Start: 15684180 End: 15685610 |
Description | glycosyl hydrolase family 17 protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 128 | 194 | 3.1e-22 |
TCSRRQEVGVDCGPIQPGGACFDEDVRARASYAMNSYYQVKGGNDFNCDFSGTGLITITDPSHGGCK | |||
CBM43 | 222 | 303 | 1.8e-25 |
WCVPKPGVTDAVLQQNMDWLCGTHKVHCNNVMPGAKCYAESILPRASYLMDVYYKKYGRHDYDCDFNGSAQITNINPSWGSC | |||
CBM43 | 26 | 107 | 5.1e-28 |
CVAKPGVSEQTLQANIFYACAQSGVDCSPIQPGGSCYTSDLTTWASYAMNAYFNVYRSKGATCDFSQSAQLTSTDPSNGSCN |
Full Sequence |
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Protein Sequence Length: 307 Download |
MATTKLVFSL LLLLRLASPT SAAEFCVAKP GVSEQTLQAN IFYACAQSGV DCSPIQPGGS 60 CYTSDLTTWA SYAMNAYFNV YRSKGATCDF SQSAQLTSTD PSNGSCNFGQ PGSGSNPPPA 120 GSGAPKTTCS RRQEVGVDCG PIQPGGACFD EDVRARASYA MNSYYQVKGG NDFNCDFSGT 180 GLITITDPSH GGCKYIEAGG QGPSGPTPTQ PSKPAQPSKG GWCVPKPGVT DAVLQQNMDW 240 LCGTHKVHCN NVMPGAKCYA ESILPRASYL MDVYYKKYGR HDYDCDFNGS AQITNINPSW 300 GSCIYN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 3.0e-12 | 222 | 291 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
pfam07983 | X8 | 5.0e-14 | 26 | 94 | 75 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 6.0e-22 | 222 | 305 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
smart00768 | X8 | 1.0e-22 | 136 | 195 | 61 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
smart00768 | X8 | 1.0e-27 | 25 | 108 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 9e-22 | 18 | 116 | 6 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 2jon_A | 5e-19 | 214 | 305 | 5 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 2jon_A | 1e-17 | 136 | 195 | 36 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |