Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna31503.1-v1.0-hybrid |
Family | CBM43 |
Protein Properties | Length: 492 Molecular Weight: 53257.1 Isoelectric Point: 4.738 |
Chromosome | Chromosome/Scaffold: 5 Start: 20196487 End: 20198385 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 383 | 461 | 5.3e-29 |
WCIAKPHADEKVLQAVLDFCCGGGGVDCREIYDNGDCFEPDKLLAHASYAMNAYYQMHGRNYWNCDFKGTGLVTFSDPI | |||
GH17 | 26 | 351 | 0 |
VGINYGTLGNNLPPPKRVAQLLQSTLIDKVKIYDTNPEILQAFSNTGIDLIVAVENSRVANISSDVSSADEWFATRVLPFIPATSITSIAVGNEYLTSNS DHQVLDPAALVQAMQNLHSVLIARALDRKIKITTPHSMAILASSFPPSASTFATDLVPTMTSIVAFLADTASPFMINAYPYFAYRDNPDMVNLQYALLGN STSTGVRDPKGYTYSNMLDAQIDAVRSAVDALGLGPHRTVEIMVSESGWPSKGDTGEIAATPENARTYNTRLIERAQSNKGTPMKPKDKIEVFVFALFNE NKKEGGASERNFGIFNGDGSKVYEVD |
Full Sequence |
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Protein Sequence Length: 492 Download |
MATTQLLLLL LPFILNPLSN LAVSGVGINY GTLGNNLPPP KRVAQLLQST LIDKVKIYDT 60 NPEILQAFSN TGIDLIVAVE NSRVANISSD VSSADEWFAT RVLPFIPATS ITSIAVGNEY 120 LTSNSDHQVL DPAALVQAMQ NLHSVLIARA LDRKIKITTP HSMAILASSF PPSASTFATD 180 LVPTMTSIVA FLADTASPFM INAYPYFAYR DNPDMVNLQY ALLGNSTSTG VRDPKGYTYS 240 NMLDAQIDAV RSAVDALGLG PHRTVEIMVS ESGWPSKGDT GEIAATPENA RTYNTRLIER 300 AQSNKGTPMK PKDKIEVFVF ALFNENKKEG GASERNFGIF NGDGSKVYEV DLSCQFCSGD 360 SDGGGNGGFG EKLSGAVRGP SVWCIAKPHA DEKVLQAVLD FCCGGGGVDC REIYDNGDCF 420 EPDKLLAHAS YAMNAYYQMH GRNYWNCDFK GTGLVTFSDP IDQTRKNDKE PKVVDSYLDL 480 FTLQYCYGSE T* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 1.0e-6 | 88 | 343 | 259 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-19 | 383 | 453 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 6.0e-32 | 383 | 460 | 78 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-91 | 26 | 351 | 326 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 26 | 352 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 26 | 352 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 26 | 352 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_D | 0 | 26 | 353 | 2 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_C | 0 | 26 | 353 | 2 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |