| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma04g09680.2 |
| Family | PL4 |
| Protein Properties | Length: 706 Molecular Weight: 80898.7 Isoelectric Point: 6.5248 |
| Chromosome | Chromosome/Scaffold: 04 Start: 7955340 End: 7961008 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 69 | 688 | 0 |
| RLDIQDKHVIMDNGIVQVNLSNPEGIVTGIQYNGIDNLLEVLNDESNRGYWDIVWDEGGKKRTKKGAKGKGRFDRMEATNFTVIVESEEQVELSFSRTWN DSLEGKLPPLNIDKRFIMLSGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKPRKDKFHYMVVADNRQRFMPLPDDRSPPRGQVLAYPEAVRLVDPLEPEFK GEVDDKYQYACESRYNRVHGWICIDPVNSTGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGADLIMQFGPNEPWKKVYGPIFIYLNSLSNG FSPIGLWEDAKQQMVNEVESWPYTFPASEDFLSSDQRGKVEGRLLVRDRYISDAFIPVSGAYVGLAAIGEVGSWQRECKGYQFWTITDDKGYFSIINIRP GGYNLYSWVNGFIGDYQFDSVIYVTSGCETNVGELVYEAPRDGPTLWEIGIPDRSAAEFYVPDPNPMCINRLYVNHPDRFRQYGLWERYAELYPNEDLVY TVGISDYRKDWFFAQVNRKKDNGTYIGTTWQINFKLDSVNTNGTYTLQVALASVHSAELEIRINNLEANPPLFSSGVIGKENTIARHGIHGLYWLFSIHI QGTLLVQGNNTIFLTQTRDT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 706 Download |
| MQISFIKIKK KSDADKSKRT RNSEATFVIK QSPKRANPMQ KTMDFSIRFL FLMLQFLIVL 60 GCATKPGVRL DIQDKHVIMD NGIVQVNLSN PEGIVTGIQY NGIDNLLEVL NDESNRGYWD 120 IVWDEGGKKR TKKGAKGKGR FDRMEATNFT VIVESEEQVE LSFSRTWNDS LEGKLPPLNI 180 DKRFIMLSGS SGFYTYAIYE HLKEWPAFDL DNTRIAFKPR KDKFHYMVVA DNRQRFMPLP 240 DDRSPPRGQV LAYPEAVRLV DPLEPEFKGE VDDKYQYACE SRYNRVHGWI CIDPVNSTGF 300 WLITPSYEFR SAGPLKQYLT SHVGPTTLSV FHSTHYSGAD LIMQFGPNEP WKKVYGPIFI 360 YLNSLSNGFS PIGLWEDAKQ QMVNEVESWP YTFPASEDFL SSDQRGKVEG RLLVRDRYIS 420 DAFIPVSGAY VGLAAIGEVG SWQRECKGYQ FWTITDDKGY FSIINIRPGG YNLYSWVNGF 480 IGDYQFDSVI YVTSGCETNV GELVYEAPRD GPTLWEIGIP DRSAAEFYVP DPNPMCINRL 540 YVNHPDRFRQ YGLWERYAEL YPNEDLVYTV GISDYRKDWF FAQVNRKKDN GTYIGTTWQI 600 NFKLDSVNTN GTYTLQVALA SVHSAELEIR INNLEANPPL FSSGVIGKEN TIARHGIHGL 660 YWLFSIHIQG TLLVQGNNTI FLTQTRDTSP FIGIMYDYIR LEYKR* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG1429 | CobN | 0.003 | 448 | 579 | 143 | + Cobalamin biosynthesis protein CobN and related Mg-chelatases [Coenzyme metabolism] | ||
| cd10316 | RGL4_M | 1.0e-27 | 404 | 503 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 2.0e-51 | 515 | 702 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 4.0e-64 | 73 | 364 | 294 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 1.0e-93 | 43 | 271 | 231 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI19298.1 | 0 | 67 | 702 | 5 | 642 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002285626.1 | 0 | 79 | 702 | 1 | 613 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002301112.1 | 0 | 79 | 702 | 1 | 612 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527353.1 | 0 | 67 | 702 | 5 | 631 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527357.1 | 0 | 64 | 702 | 2 | 632 | lyase, putative [Ricinus communis] |
