| Basic Information | |
|---|---|
| Species | Ricinus communis |
| Cazyme ID | 29842.m003574 |
| Family | PL4 |
| Protein Properties | Length: 361 Molecular Weight: 41301 Isoelectric Point: 7.4961 |
| Chromosome | Chromosome/Scaffold: 29842 Start: 345466 End: 348186 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| PL4 | 232 | 356 | 3.1e-26 |
| SESDHTFIIGISDPKKDWFFTQVDRRGADKYLPIKWIIKFKLDSVATGTYKLRLAIASATHSNLEVYVNDMDVQHMVFRVMNLGTDNTVHRHGIHELYNL FSIDISSSMLTEGDSSMFLAKARGT | |||
| PL4 | 19 | 219 | 2.2e-40 |
| YTVVERSNGRLEVSFKNTYNPSVGETRLPLTIDISYILRSGVSGFNCFAVYERPAFDLAQTRMVFKLRREVNLILRISDEKQRIMPMPEDLLPGRDKQLI VPESFLLVNPINPDIGGEVDDKYQYSVDNKDGGIHGWISSDPIVGFWIIFPSHEDRNGGPTKQNLTAHTGPYCLARFHGTHYIGHDIIAHFQEGEEWRKV Q | |||
| Full Sequence |
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| Protein Sequence Length: 361 Download |
| MNPRQSFTSQ VRGLYRDVYT VVERSNGRLE VSFKNTYNPS VGETRLPLTI DISYILRSGV 60 SGFNCFAVYE RPAFDLAQTR MVFKLRREVN LILRISDEKQ RIMPMPEDLL PGRDKQLIVP 120 ESFLLVNPIN PDIGGEVDDK YQYSVDNKDG GIHGWISSDP IVGFWIIFPS HEDRNGGPTK 180 QNLTAHTGPY CLARFHGTHY IGHDIIAHFQ EGEEWRKVQA IWLVGQIHRY TSESDHTFII 240 GISDPKKDWF FTQVDRRGAD KYLPIKWIIK FKLDSVATGT YKLRLAIASA THSNLEVYVN 300 DMDVQHMVFR VMNLGTDNTV HRHGIHELYN LFSIDISSSM LTEGDSSMFL AKARGTLRTS 360 V 420 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10317 | RGL4_C | 2.0e-18 | 237 | 356 | 124 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 5.0e-27 | 21 | 137 | 121 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| cd10320 | RGL4_N | 4.0e-35 | 21 | 224 | 206 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| Hydropathy |
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| Sequence Alignments (This image is cropped. Click for full image.) |
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