Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi3g24670.1 |
Family | PL4 |
Protein Properties | Length: 543 Molecular Weight: 60142.8 Isoelectric Point: 6.0339 |
Chromosome | Chromosome/Scaffold: 3 Start: 24264431 End: 24266874 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 25 | 224 | 2.3e-39 |
SDGGVTLHVDRNQVLVDNGLVQVALSRPDGHITGVRYGGERNLLHSSRRGGNTGGYWDLVWNSPGSGQRGNYDMLEGSELSVVSESKDQVEVSFRSTYNP AKQTGVPLNLDKRLVMLKGSSGFYCYAILEHGGDTPAIDIRVAFKLNTERFNYMAISDDIQRYMPRAKDRDAPRSAPLAFKEAVLLVDPSESQFKGEVDD | |||
PL4 | 227 | 515 | 0 |
PIGFWVVTPSNEFKPGGRLKRYLTSHVGPTSLSVFIGTHYVGDDIVARVRDGEYWNKVMGPVFIYLNMGPGGPLTLWEDANAVAESEAAKWPYGFLGSKD FPKAHERGSITGRLSVTDRYVSRDDMPARMAYVGLAALGQHGSWATESKGYQFWSRASATSGEFTIDNVRAGDYNLYAWVPGVLGDYINTTRVRVTPGRA INLGDLVFEPPRSGPTLWEIGVPDRSSAEMFVPDPDPKYLNKLFANNDKYRQYGLWERYADLYPTDDLVYTVGKSNHSKDWFFAHVTSM |
Full Sequence |
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Protein Sequence Length: 543 Download |
MAMGIVLLAV ALSLMQVLAG AAAPSDGGVT LHVDRNQVLV DNGLVQVALS RPDGHITGVR 60 YGGERNLLHS SRRGGNTGGY WDLVWNSPGS GQRGNYDMLE GSELSVVSES KDQVEVSFRS 120 TYNPAKQTGV PLNLDKRLVM LKGSSGFYCY AILEHGGDTP AIDIRVAFKL NTERFNYMAI 180 SDDIQRYMPR AKDRDAPRSA PLAFKEAVLL VDPSESQFKG EVDDNCPIGF WVVTPSNEFK 240 PGGRLKRYLT SHVGPTSLSV FIGTHYVGDD IVARVRDGEY WNKVMGPVFI YLNMGPGGPL 300 TLWEDANAVA ESEAAKWPYG FLGSKDFPKA HERGSITGRL SVTDRYVSRD DMPARMAYVG 360 LAALGQHGSW ATESKGYQFW SRASATSGEF TIDNVRAGDY NLYAWVPGVL GDYINTTRVR 420 VTPGRAINLG DLVFEPPRSG PTLWEIGVPD RSSAEMFVPD PDPKYLNKLF ANNDKYRQYG 480 LWERYADLYP TDDLVYTVGK SNHSKDWFFA HVTSMFFGVM YDYIRFEGPP GFWRLIFAQD 540 VD* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10317 | RGL4_C | 6.0e-13 | 444 | 513 | 70 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10316 | RGL4_M | 2.0e-28 | 332 | 432 | 101 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-43 | 31 | 302 | 291 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-83 | 1 | 222 | 225 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA96404.1 | 0 | 24 | 513 | 43 | 570 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ABI15897.1 | 0 | 37 | 513 | 2 | 506 | putative rhamnogalacturonate lyase [Triticum turgidum subsp. dicoccoides] |
RefSeq | NP_001066077.1 | 0 | 24 | 513 | 43 | 557 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bwr_A | 0.007 | 266 | 367 | 43 | 144 | A Chain A, Probing The Substrate Specificity Of The Intracellular Brain Platelet-Activating Factor Acetylhydrolase |