Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000726337 |
Family | PL4 |
Protein Properties | Length: 772 Molecular Weight: 87720.8 Isoelectric Point: 5.2707 |
Chromosome | Chromosome/Scaffold: 003870394 Start: 3542 End: 12500 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 5 | 162 | 0 |
DNRQRYMPLPDDRLPGRCQTLAYQEAVLLVNPKMKDLAGEVDDKYQYSCDNKDNKVHGWICTNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFL SGHYAGQDLVPKFRGGEPWKKVFGPVFIYLNSSTIKDDPFWLWEDAKIQVCRRKQTQF | |||
PL4 | 184 | 393 | 0 |
IQMMTEVQSWPYSFPASEDFQKSDQRGNVSGRLLVLDRYICEQYTPAGGAYVGLAPPGDVGSWQRECKDYQFWTTADDRGYFAINNVRTGNYNLYAWVPG FIGDYRYDAVIDITSGSFIEMGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPDPKYVNKLFINHPDRKTDNGHEGTTWQIKFELKNVDRNTTYKLRVAI ASATLAELQV | |||
PL4 | 390 | 638 | 0 |
ELQVMMDNGIVQVTLSKPDGIVTGIRYNGIDNLLEIRNEESNRGYWDLVWSSATTGTTGTFDVIKGTSFTVIMQNDEQVELSFTRXWDPSQEGQLVPLNI DKRFIMLRGCSGFYSYAIYEHLKDWPAFQLAETRIAFKLRKDNFHYMAMADNRQRYMPLPDDRLPPRGQALAYPEAVLLVNPVEPEFKGEVDDKYQYSCD NKDSKVHGWICTEPXVGFWLITPSQEFRSGGPFKQNLTSHVGPTTLAMV |
Full Sequence |
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Protein Sequence Length: 772 Download |
MAVSDNRQRY MPLPDDRLPG RCQTLAYQEA VLLVNPKMKD LAGEVDDKYQ YSCDNKDNKV 60 HGWICTNPPV GFWQITPSDE FRSGGPLKQN LTSHVGPTTL AMFLSGHYAG QDLVPKFRGG 120 EPWKKVFGPV FIYLNSSTIK DDPFWLWEDA KIQVCRRKQT QFHSKDGKLG KQVFKQKLLI 180 QNGIQMMTEV QSWPYSFPAS EDFQKSDQRG NVSGRLLVLD RYICEQYTPA GGAYVGLAPP 240 GDVGSWQREC KDYQFWTTAD DRGYFAINNV RTGNYNLYAW VPGFIGDYRY DAVIDITSGS 300 FIEMGDLVYE PPRDGPTLWE IGIPDRSAAE FYVPDPDPKY VNKLFINHPD RKTDNGHEGT 360 TWQIKFELKN VDRNTTYKLR VAIASATLAE LQVMMDNGIV QVTLSKPDGI VTGIRYNGID 420 NLLEIRNEES NRGYWDLVWS SATTGTTGTF DVIKGTSFTV IMQNDEQVEL SFTRXWDPSQ 480 EGQLVPLNID KRFIMLRGCS GFYSYAIYEH LKDWPAFQLA ETRIAFKLRK DNFHYMAMAD 540 NRQRYMPLPD DRLPPRGQAL AYPEAVLLVN PVEPEFKGEV DDKYQYSCDN KDSKVHGWIC 600 TEPXVGFWLI TPSQEFRSGG PFKQNLTSHV GPTTLAMVXE VQSWPYSFPA SEDFPKSRXR 660 GNVRGRLLIQ DRYVSDDYVS INGAYVGLAP PGDVGSWQRE CKDYQFWTTT DEDGYFCING 720 VRTGDYNLNA SVPGFIGDYH YDVVMTITSG GPTNSLMLIC IGSNYNLRWS N* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam06045 | Rhamnogal_lyase | 6.0e-14 | 1 | 45 | 45 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
cd10316 | RGL4_M | 3.0e-30 | 208 | 307 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 3.0e-39 | 15 | 142 | 128 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-59 | 385 | 637 | 257 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 1.0e-101 | 384 | 580 | 197 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002285626.1 | 0 | 1 | 397 | 140 | 544 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 395 | 750 | 1 | 406 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002306520.1 | 0 | 1 | 427 | 140 | 576 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 1 | 405 | 159 | 571 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 392 | 759 | 14 | 434 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GW864372 | 331 | 1 | 331 | 0 |
GW864372 | 279 | 524 | 750 | 0 |
DK498554 | 251 | 392 | 637 | 0 |
DW479599 | 252 | 392 | 642 | 0 |
DK498554 | 105 | 1 | 104 | 1.99965e-42 |
Sequence Alignments (This image is cropped. Click for full image.) |
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