Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr4g133730.1 |
Family | CBM43 |
Protein Properties | Length: 202 Molecular Weight: 22616.3 Isoelectric Point: 5.9969 |
Chromosome | Chromosome/Scaffold: 4 Start: 47385724 End: 47389780 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 28 | 108 | 1.2e-29 |
WCIADEQTPDDDLQRAMDWACHVGGANCSNIQVNHPCYLPNTMKDHASYVFNNYYQKFKHKGGSCYFNSAAITSDLDPSHG | |||
CBM43 | 113 | 196 | 7.8e-31 |
WCIADGQIPDDVLQRAMDYACHVDGVDCSKIQVNQPCYLPNTVKDHASYAFNDYYQKYKHKGGSCYFNYAAITSASDPSHGSCK |
Full Sequence |
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Protein Sequence Length: 202 Download |
MSSSMVKILI AMLLVTLSFQ ASGQFLEWCI ADEQTPDDDL QRAMDWACHV GGANCSNIQV 60 NHPCYLPNTM KDHASYVFNN YYQKFKHKGG SCYFNSAAIT SDLDPSHGKY MEWCIADGQI 120 PDDVLQRAMD YACHVDGVDC SKIQVNQPCY LPNTVKDHAS YAFNDYYQKY KHKGGSCYFN 180 YAAITSASDP SHGSCKFEYN P* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 2.0e-14 | 28 | 99 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
pfam07983 | X8 | 6.0e-15 | 113 | 184 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-27 | 28 | 108 | 81 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
smart00768 | X8 | 2.0e-31 | 113 | 197 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK92842.1 | 0 | 12 | 107 | 9 | 110 | unknown [Populus trichocarpa] |
GenBank | ABK92842.1 | 2.94273e-44 | 103 | 201 | 21 | 119 | unknown [Populus trichocarpa] |
RefSeq | XP_002271054.1 | 0 | 1 | 198 | 1 | 216 | PREDICTED: similar to hydrolase, hydrolyzing O-glycosyl compounds [Vitis vinifera] |
RefSeq | XP_002307902.1 | 0 | 12 | 107 | 8 | 109 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002307902.1 | 2.94273e-44 | 103 | 201 | 20 | 118 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 0.000000000000002 | 105 | 197 | 5 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 2jon_A | 0.00000000003 | 27 | 108 | 12 | 92 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |