Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr5g015720.1 |
Family | CBM43 |
Protein Properties | Length: 418 Molecular Weight: 45908.6 Isoelectric Point: 6.5659 |
Chromosome | Chromosome/Scaffold: 5 Start: 5252027 End: 5253988 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 23 | 166 | 3.1e-21 |
ENIEFLNLCETSEDIATSSSHSEFPLAVSLNNEDLNMVSSNILSAETWLRLNIFPYYPSSKITNIVGKTSTFCQQDQNNLNVVLSSLKNLYHSLKRWGLE QDIKVSIAFDLDCFTLNSATSNHDLKMLKPMIEFLQTVNSTFSL | |||
CBM43 | 329 | 412 | 9.7e-33 |
WCVAKPSVPDATLQEALDYACGEGGADCLEITTPQGNCYNPDTLVAHASYAFNSYWQKHKRIGGTCDFGGTAMLIHSDPSFLHC |
Full Sequence |
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Protein Sequence Length: 418 Download |
MKMVCLFHLL FLCSVCIVVS GQENIEFLNL CETSEDIATS SSHSEFPLAV SLNNEDLNMV 60 SSNILSAETW LRLNIFPYYP SSKITNIVGK TSTFCQQDQN NLNVVLSSLK NLYHSLKRWG 120 LEQDIKVSIA FDLDCFTLNS ATSNHDLKML KPMIEFLQTV NSTFSLIPSS KFSHFSDKSL 180 NFVSSHLESM KKLGFFNHNN IINIATIVPK ERKITIRKLS VTTIPIKPTP IPEIAQPPLD 240 FPAGSPYPAP YNVPNPKPLP PLAQIVSSPP PISSPYFAPQ EQPSPLPPQF VSPANSPQNG 300 FTCPPCNPIE NGSPSASPYP QIAPVQKLWC VAKPSVPDAT LQEALDYACG EGGADCLEIT 360 TPQGNCYNPD TLVAHASYAF NSYWQKHKRI GGTCDFGGTA MLIHSDPSFL HCRFILS* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 1.0e-25 | 328 | 401 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 6.0e-38 | 328 | 414 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU22745.1 | 0 | 190 | 417 | 1 | 206 | unknown [Glycine max] |
EMBL | CBI33700.1 | 0 | 1 | 417 | 2 | 357 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_201547.1 | 0 | 6 | 417 | 5 | 380 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
RefSeq | XP_002279597.1 | 0 | 1 | 417 | 2 | 413 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002525263.1 | 0 | 20 | 413 | 22 | 418 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 0.000000000000004 | 329 | 414 | 13 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 2cyg_A | 0.000006 | 24 | 159 | 26 | 164 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0.0002 | 13 | 162 | 16 | 171 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0.0002 | 13 | 162 | 16 | 171 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 0.0002 | 13 | 162 | 16 | 171 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |