Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.001G006500.2 |
Family | CBM43 |
Protein Properties | Length: 494 Molecular Weight: 52775.6 Isoelectric Point: 4.6162 |
Chromosome | Chromosome/Scaffold: 01 Start: 440697 End: 444941 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 357 | 439 | 1.5e-31 |
CVAKPNADPGKLQAGLDWACGQGGANCDAIQEGKPCYLPNTYQNHASYAYNDYYKKKRSVGATCDFDGTAATTTVDPSYGSCK | |||
GH17 | 22 | 341 | 0 |
VGINLGTDVSNMPSAPDVVSILKANQITHLRLYDADAHMLKALADSGIEVMVGVTNEEVLGIGESPSKAAAWINQNVAAYLPSTSITAIAVGSEVLTSIP NLVPVLVPAMNYLHKALVASNLNFQVKISTPQAMDIIPRPFPPSTATFNSSWSATVYQILQFLKNTDSFYMLNAYPYFGYTSGNGIFPLDYALFRSLPSV KQIVDPNTLSHYDSMFDALVDATYYSIEALNMSGISIVVTETGWPWLGGANEPDATAENAETFNSNLIRRVLNDSGPPSQPKVPINTYIYELFNEDKRPG PVSEKNWGLFFTNGSAVYTF |
Full Sequence |
---|
Protein Sequence Length: 494 Download |
MVLGNLLLFI VGIFSYASGA FVGINLGTDV SNMPSAPDVV SILKANQITH LRLYDADAHM 60 LKALADSGIE VMVGVTNEEV LGIGESPSKA AAWINQNVAA YLPSTSITAI AVGSEVLTSI 120 PNLVPVLVPA MNYLHKALVA SNLNFQVKIS TPQAMDIIPR PFPPSTATFN SSWSATVYQI 180 LQFLKNTDSF YMLNAYPYFG YTSGNGIFPL DYALFRSLPS VKQIVDPNTL SHYDSMFDAL 240 VDATYYSIEA LNMSGISIVV TETGWPWLGG ANEPDATAEN AETFNSNLIR RVLNDSGPPS 300 QPKVPINTYI YELFNEDKRP GPVSEKNWGL FFTNGSAVYT FSLSTSNQIT GNNSDFCVAK 360 PNADPGKLQA GLDWACGQGG ANCDAIQEGK PCYLPNTYQN HASYAYNDYY KKKRSVGATC 420 DFDGTAATTT VDPSYGSCKF TGSSTITPNS NGGFTTTVAP GPVTPQGGSA TVNLPVSKIQ 480 FLISAVFLAL VLL* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.007 | 254 | 334 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 1.0e-19 | 357 | 426 | 75 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 8.0e-38 | 356 | 440 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 9.0e-82 | 22 | 342 | 321 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN72077.1 | 0 | 23 | 443 | 27 | 448 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_187965.1 | 0 | 13 | 474 | 17 | 478 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002283548.1 | 0 | 23 | 440 | 27 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002297638.1 | 0 | 33 | 493 | 1 | 461 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002304004.1 | 0 | 33 | 369 | 1 | 337 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 22 | 343 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 22 | 331 | 3 | 302 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 22 | 331 | 3 | 302 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur7_B | 0 | 22 | 331 | 3 | 302 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 22 | 331 | 3 | 302 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |