Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.003G218500.4 |
Family | CBM43 |
Protein Properties | Length: 494 Molecular Weight: 53057.9 Isoelectric Point: 4.8418 |
Chromosome | Chromosome/Scaffold: 03 Start: 21447262 End: 21451778 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 357 | 439 | 3.7e-31 |
CVAKPNADPGKLQVGLNWACGQGGANCSAIQEGQPCYLPNTYQNHASYAYNDYYQKMHLAGATCDFDGTATTTTANPSYGSCK | |||
GH17 | 22 | 341 | 0 |
VGINIGTDVSNMPSAPDVVAILKTNQITHVRLYDADAHMLKALADSGIEVMVGVTNEEILGIGESASKAAAWINQNVAAYLPSTNITAIAVGSEVLTTIP NVVPVLVPAMNYLHKALVASNLNFQVKVSTPQAMDVIPRPFPPSTATFNSSWDSTIYQILQFLKNTNSYYMLNAYPYFGYTSGNGIFPLDYALFRSLPPV KQIVDPNTLSHYDSMFDAMVDATYYSIDALNMSGIPIVVTETGWPWLGGANEPDATADNAETFNNNMIRRVQNDSGPPSQPKFPINTYIYEMFNEDKRPG PVSEKNWGLFFTNGSSVYTF |
Full Sequence |
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Protein Sequence Length: 494 Download |
MVPGRLLLLI VTTLHYASGA FVGINIGTDV SNMPSAPDVV AILKTNQITH VRLYDADAHM 60 LKALADSGIE VMVGVTNEEI LGIGESASKA AAWINQNVAA YLPSTNITAI AVGSEVLTTI 120 PNVVPVLVPA MNYLHKALVA SNLNFQVKVS TPQAMDVIPR PFPPSTATFN SSWDSTIYQI 180 LQFLKNTNSY YMLNAYPYFG YTSGNGIFPL DYALFRSLPP VKQIVDPNTL SHYDSMFDAM 240 VDATYYSIDA LNMSGIPIVV TETGWPWLGG ANEPDATADN AETFNNNMIR RVQNDSGPPS 300 QPKFPINTYI YEMFNEDKRP GPVSEKNWGL FFTNGSSVYT FSLSTSNRIT GNNSDFCVAK 360 PNADPGKLQV GLNWACGQGG ANCSAIQEGQ PCYLPNTYQN HASYAYNDYY QKMHLAGATC 420 DFDGTATTTT ANPSYGSCKF TGSSTTTPNS TGGFTPSVAP GPVSPQGGSG TANLQVLRIQ 480 FVISSMFLAL VLL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.001 | 254 | 334 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 7.0e-14 | 357 | 413 | 62 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-26 | 356 | 439 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 6.0e-84 | 22 | 342 | 321 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN72077.1 | 0 | 23 | 443 | 27 | 448 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_187965.1 | 0 | 12 | 474 | 16 | 478 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002283548.1 | 0 | 23 | 440 | 27 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002297638.1 | 0 | 33 | 493 | 1 | 461 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002304004.1 | 0 | 33 | 370 | 1 | 338 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 22 | 343 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 22 | 343 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 22 | 343 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3ur8_B | 0 | 22 | 331 | 3 | 302 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3ur8_A | 0 | 22 | 331 | 3 | 302 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |