Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.004G010500.2 |
Family | CBM43 |
Protein Properties | Length: 470 Molecular Weight: 51542.6 Isoelectric Point: 4.9274 |
Chromosome | Chromosome/Scaffold: 04 Start: 674319 End: 676558 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 383 | 464 | 6.7e-34 |
CIVMDGVDSKTLQAALDWVCGPGRANCSEIQPGENCYQPNNVKNHASYAFDSYYQKEGRASGSCDFKGIAMTTTTDPSHGSC | |||
GH17 | 45 | 364 | 0 |
VGINIGEDVSNLMSATELVSFLQFQKVTHIKLYDVDPDILKALANTKIRVIISVPNNQLLAIGSSNTTAASWIGKNVVAYYPQTVITAIAVGDEVLTTVP SSAPLLMPAIESLYSALVAENLHNQIKISTPHSASIILDSFPPSQSFFNQSWISVIQPLLHFLSRTGSPLMMNFYPYYVFMQNKGVVPLDNSLFKPLTPS KEMVDPNTLLHYTNVLDAMVDAAYFSMKNMNFTDVVVLVTESGWPSKGDSKEPYATIDNADTYNSNLIKHVLDRSGTPLHPEITSSVYLYELFNEDLRSP PVSEANWGLFYANSTPVYLL |
Full Sequence |
---|
Protein Sequence Length: 470 Download |
MALSKLPLCS VFFFLYISLF ISSQALSSKI AVAQIKDQQD NEPFVGINIG EDVSNLMSAT 60 ELVSFLQFQK VTHIKLYDVD PDILKALANT KIRVIISVPN NQLLAIGSSN TTAASWIGKN 120 VVAYYPQTVI TAIAVGDEVL TTVPSSAPLL MPAIESLYSA LVAENLHNQI KISTPHSASI 180 ILDSFPPSQS FFNQSWISVI QPLLHFLSRT GSPLMMNFYP YYVFMQNKGV VPLDNSLFKP 240 LTPSKEMVDP NTLLHYTNVL DAMVDAAYFS MKNMNFTDVV VLVTESGWPS KGDSKEPYAT 300 IDNADTYNSN LIKHVLDRSG TPLHPEITSS VYLYELFNED LRSPPVSEAN WGLFYANSTP 360 VYLLHVSGSG TFLANDTTNQ TYCIVMDGVD SKTLQAALDW VCGPGRANCS EIQPGENCYQ 420 PNNVKNHASY AFDSYYQKEG RASGSCDFKG IAMTTTTDPS HGSCIFPGR* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 3.0e-6 | 277 | 357 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-23 | 381 | 453 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 9.0e-42 | 381 | 466 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 6.0e-77 | 45 | 362 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC17632.1 | 0 | 22 | 460 | 25 | 459 | Similar to glucan endo-1,3-beta-D-glucosidase precursor gb |
EMBL | CBI23232.1 | 0 | 16 | 468 | 17 | 470 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002316541.1 | 0 | 57 | 468 | 1 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332610.1 | 0 | 57 | 468 | 1 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518468.1 | 0 | 1 | 468 | 1 | 473 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 45 | 362 | 1 | 308 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 45 | 367 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 45 | 367 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur7_B | 0 | 45 | 367 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 45 | 367 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |