Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.004G086400.1 |
Family | CBM43 |
Protein Properties | Length: 506 Molecular Weight: 54529.1 Isoelectric Point: 4.9841 |
Chromosome | Chromosome/Scaffold: 04 Start: 7246223 End: 7250739 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 369 | 450 | 7.5e-31 |
CTAKQGADPKMLQAALDWACGPGKVDCSAMLQGEPCYQPDNVIAHATYAFNSYYNQMGKAPGTCDFNGVAAITTTNPSHGTC | |||
GH17 | 31 | 350 | 0 |
IGVNIGTDLSDMPHPTQVVALLKAQQIRHVRLYDADRGMLVALANTGIQVMVSVPNEQLLGIGQSNSTAANWVSHNVVAHYPATNITAICVGSEVFTAVP NAASVLVNAMKFIQSALVASNLDRQIKVSTPLSSSIILDSFPPSQAFFNKTWNPVLIPMLNFLQSTGSHLMLNIYPYYDYMQSNGVIPLDYALLKPLAPN KEAVDANTLVHYSNVFDAMIDATYFAMDFLNFTNVPVMVTETGWPSKGDSNEPDATLDNANTYNSNLIRHVLNKTGTPKHPGIAVSTYIYELYNEDLKPG PVSEKNWGLFNANGEPVYIL |
Full Sequence |
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Protein Sequence Length: 506 Download |
MFWSMESVFV LILLLSAAVS SFVAADDEAF IGVNIGTDLS DMPHPTQVVA LLKAQQIRHV 60 RLYDADRGML VALANTGIQV MVSVPNEQLL GIGQSNSTAA NWVSHNVVAH YPATNITAIC 120 VGSEVFTAVP NAASVLVNAM KFIQSALVAS NLDRQIKVST PLSSSIILDS FPPSQAFFNK 180 TWNPVLIPML NFLQSTGSHL MLNIYPYYDY MQSNGVIPLD YALLKPLAPN KEAVDANTLV 240 HYSNVFDAMI DATYFAMDFL NFTNVPVMVT ETGWPSKGDS NEPDATLDNA NTYNSNLIRH 300 VLNKTGTPKH PGIAVSTYIY ELYNEDLKPG PVSEKNWGLF NANGEPVYIL HLTGSGLVLA 360 NDTTNQTYCT AKQGADPKML QAALDWACGP GKVDCSAMLQ GEPCYQPDNV IAHATYAFNS 420 YYNQMGKAPG TCDFNGVAAI TTTNPSHGTC VFPGSTGRMN GTMVNITAPS MNSTSAAPSA 480 RDLYNLGSTN FLVLLRVLIC SIVFL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 3.0e-8 | 263 | 343 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 3.0e-19 | 367 | 438 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-39 | 367 | 452 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 3.0e-92 | 31 | 348 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK85402.2 | 0 | 21 | 481 | 12 | 471 | beta-1,3-glucanase [Camellia sinensis] |
RefSeq | XP_002265396.1 | 0 | 23 | 480 | 14 | 471 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301689.1 | 0 | 23 | 505 | 1 | 481 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002305879.1 | 0 | 28 | 505 | 14 | 491 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002531922.1 | 0 | 27 | 505 | 30 | 508 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 31 | 348 | 1 | 308 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 31 | 352 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 31 | 352 | 3 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur7_B | 0 | 31 | 352 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 31 | 352 | 3 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |