Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.004G086400.2 |
Family | CBM43 |
Protein Properties | Length: 465 Molecular Weight: 50165.1 Isoelectric Point: 6.1111 |
Chromosome | Chromosome/Scaffold: 04 Start: 7247103 End: 7250739 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 328 | 409 | 6.6e-31 |
CTAKQGADPKMLQAALDWACGPGKVDCSAMLQGEPCYQPDNVIAHATYAFNSYYNQMGKAPGTCDFNGVAAITTTNPSHGTC | |||
GH17 | 2 | 309 | 0 |
PHPTQVVALLKAQQIRHVRLYDADRGMLVALANTGIQVMVSVPNEQLLGIGQSNSTAANWVSHNVVAHYPATNITAICVGSEVFTAVPNAASVLVNAMKF IQSALVASNLDRQIKVSTPLSSSIILDSFPPSQAFFNKTWNPVLIPMLNFLQSTGSHLMLNIYPYYDYMQSNGVIPLDYALLKPLAPNKEAVDANTLVHY SNVFDAMIDATYFAMDFLNFTNVPVMVTETGWPSKGDSNEPDATLDNANTYNSNLIRHVLNKTGTPKHPGIAVSTYIYELYNEDLKPGPVSEKNWGLFNA NGEPVYIL |
Full Sequence |
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Protein Sequence Length: 465 Download |
MPHPTQVVAL LKAQQIRHVR LYDADRGMLV ALANTGIQVM VSVPNEQLLG IGQSNSTAAN 60 WVSHNVVAHY PATNITAICV GSEVFTAVPN AASVLVNAMK FIQSALVASN LDRQIKVSTP 120 LSSSIILDSF PPSQAFFNKT WNPVLIPMLN FLQSTGSHLM LNIYPYYDYM QSNGVIPLDY 180 ALLKPLAPNK EAVDANTLVH YSNVFDAMID ATYFAMDFLN FTNVPVMVTE TGWPSKGDSN 240 EPDATLDNAN TYNSNLIRHV LNKTGTPKHP GIAVSTYIYE LYNEDLKPGP VSEKNWGLFN 300 ANGEPVYILH LTGSGLVLAN DTTNQTYCTA KQGADPKMLQ AALDWACGPG KVDCSAMLQG 360 EPCYQPDNVI AHATYAFNSY YNQMGKAPGT CDFNGVAAIT TTNPSHGTCV FPGSTGRMNG 420 TMVNITAPSM NSTSAAPSAR DLYNLGSTNF LVLLRVLICS IVFL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 2.0e-8 | 222 | 302 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-19 | 326 | 397 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-39 | 326 | 411 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-89 | 2 | 307 | 306 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK85402.2 | 0 | 1 | 440 | 33 | 471 | beta-1,3-glucanase [Camellia sinensis] |
RefSeq | XP_002265396.1 | 0 | 1 | 439 | 33 | 471 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301689.1 | 0 | 1 | 464 | 20 | 481 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002305879.1 | 0 | 1 | 464 | 28 | 491 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002531922.1 | 0 | 1 | 464 | 45 | 508 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 1 | 311 | 12 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 1 | 311 | 14 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 1 | 311 | 14 | 314 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur7_B | 0 | 1 | 311 | 14 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 1 | 311 | 14 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR951683 | 294 | 33 | 326 | 0 |
GE476981 | 314 | 61 | 374 | 0 |
EX302541 | 294 | 1 | 294 | 0 |
HS258579 | 257 | 47 | 303 | 0 |
HS013357 | 257 | 47 | 303 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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