Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.010G108500.1 |
Family | CBM43 |
Protein Properties | Length: 499 Molecular Weight: 53489.9 Isoelectric Point: 5.5082 |
Chromosome | Chromosome/Scaffold: 10 Start: 12796314 End: 12802157 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 361 | 442 | 3.8e-31 |
CVAKEGADPKMLQAALDWACGPGKVDCSFLLQGQPCYEPDNVVAHSTYAFNAYFQKMAKSPGTCDFKGVATITTSDPSHGSC | |||
GH17 | 23 | 342 | 0 |
IGVNIGTALSDMPSPTQVVALLKAQNIRHVRLYDADRAMLHALANTGIRVTVSVPNEQLLGIGQSNATAANWVARNVIAHVPATNITAIAVGSEILTTLP NAAPVLVSALKFIHSALVASNLDGQIKVSTPQSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYFMLNVYPYYDYMQSNGVIPLDYALFRPLPPN KEAVDANTLLHYTNVFDAIVDAAYFSMSYLNFTKIPIFVTESGWPSKGDSSEPDATLDNANTYNSNLIRHVLNNTGTPKHPGIVVSTYIYELYNEDSRPG PVSEKNWGLFDANGMPVYTL |
Full Sequence |
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Protein Sequence Length: 499 Download |
MALLLLLFLL MVPVVSADED AFIGVNIGTA LSDMPSPTQV VALLKAQNIR HVRLYDADRA 60 MLHALANTGI RVTVSVPNEQ LLGIGQSNAT AANWVARNVI AHVPATNITA IAVGSEILTT 120 LPNAAPVLVS ALKFIHSALV ASNLDGQIKV STPQSSSIIL DSFPPSQAFF NRSWDPVMVP 180 LLKFLQSTGS YFMLNVYPYY DYMQSNGVIP LDYALFRPLP PNKEAVDANT LLHYTNVFDA 240 IVDAAYFSMS YLNFTKIPIF VTESGWPSKG DSSEPDATLD NANTYNSNLI RHVLNNTGTP 300 KHPGIVVSTY IYELYNEDSR PGPVSEKNWG LFDANGMPVY TLHLTGAGTL LANDTTNQTF 360 CVAKEGADPK MLQAALDWAC GPGKVDCSFL LQGQPCYEPD NVVAHSTYAF NAYFQKMAKS 420 PGTCDFKGVA TITTSDPSHG SCIFPGSAGR NGTFPNTTSL APSSNSSTSG CHSVYFYGAG 480 SFTTSVIIGV LLMSMVCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 6.0e-6 | 255 | 335 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 1.0e-18 | 359 | 431 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-39 | 359 | 444 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 9.0e-90 | 23 | 340 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK85402.2 | 0 | 10 | 478 | 9 | 475 | beta-1,3-glucanase [Camellia sinensis] |
EMBL | CBI26850.1 | 0 | 17 | 477 | 17 | 477 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002312452.1 | 0 | 20 | 498 | 1 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314794.1 | 0 | 20 | 498 | 15 | 493 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527772.1 | 0 | 1 | 484 | 1 | 484 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 23 | 344 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 23 | 345 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 23 | 345 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur7_B | 0 | 23 | 345 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 23 | 345 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |