Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.010G108500.2 |
Family | CBM43 |
Protein Properties | Length: 482 Molecular Weight: 51670.6 Isoelectric Point: 6.1131 |
Chromosome | Chromosome/Scaffold: 10 Start: 12796671 End: 12802157 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 344 | 425 | 3.6e-31 |
CVAKEGADPKMLQAALDWACGPGKVDCSFLLQGQPCYEPDNVVAHSTYAFNAYFQKMAKSPGTCDFKGVATITTSDPSHGSC | |||
GH17 | 6 | 325 | 0 |
IGVNIGTALSDMPSPTQVVALLKAQNIRHVRLYDADRAMLHALANTGIRVTVSVPNEQLLGIGQSNATAANWVARNVIAHVPATNITAIAVGSEILTTLP NAAPVLVSALKFIHSALVASNLDGQIKVSTPQSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYFMLNVYPYYDYMQSNGVIPLDYALFRPLPPN KEAVDANTLLHYTNVFDAIVDAAYFSMSYLNFTKIPIFVTESGWPSKGDSSEPDATLDNANTYNSNLIRHVLNNTGTPKHPGIVVSTYIYELYNEDSRPG PVSEKNWGLFDANGMPVYTL |
Full Sequence |
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Protein Sequence Length: 482 Download |
MAYAFIGVNI GTALSDMPSP TQVVALLKAQ NIRHVRLYDA DRAMLHALAN TGIRVTVSVP 60 NEQLLGIGQS NATAANWVAR NVIAHVPATN ITAIAVGSEI LTTLPNAAPV LVSALKFIHS 120 ALVASNLDGQ IKVSTPQSSS IILDSFPPSQ AFFNRSWDPV MVPLLKFLQS TGSYFMLNVY 180 PYYDYMQSNG VIPLDYALFR PLPPNKEAVD ANTLLHYTNV FDAIVDAAYF SMSYLNFTKI 240 PIFVTESGWP SKGDSSEPDA TLDNANTYNS NLIRHVLNNT GTPKHPGIVV STYIYELYNE 300 DSRPGPVSEK NWGLFDANGM PVYTLHLTGA GTLLANDTTN QTFCVAKEGA DPKMLQAALD 360 WACGPGKVDC SFLLQGQPCY EPDNVVAHST YAFNAYFQKM AKSPGTCDFK GVATITTSDP 420 SHGSCIFPGS AGRNGTFPNT TSLAPSSNSS TSGCHSVYFY GAGSFTTSVI IGVLLMSMVC 480 L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 6.0e-6 | 238 | 318 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 1.0e-18 | 342 | 414 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-39 | 342 | 427 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 7.0e-90 | 6 | 323 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI26850.1 | 0 | 4 | 460 | 21 | 477 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002312452.1 | 0 | 4 | 481 | 2 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314794.1 | 0 | 4 | 481 | 16 | 493 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527772.1 | 0 | 4 | 467 | 21 | 484 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
RefSeq | XP_002531922.1 | 0 | 5 | 481 | 33 | 508 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 6 | 327 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 6 | 328 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 6 | 328 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur7_B | 0 | 6 | 328 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 6 | 328 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |