Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.011G094400.1 |
Family | CBM43 |
Protein Properties | Length: 477 Molecular Weight: 50871.1 Isoelectric Point: 5.0686 |
Chromosome | Chromosome/Scaffold: 11 Start: 11477099 End: 11479851 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 388 | 471 | 8.4e-34 |
WCVANGNAGAEKLQAGLDYACGEGGADCRPIQTGSTCYNPNTVEAHASYAFNSYYQKKARGAGTCDFGGAAYVVTQQPRFGNCK | |||
GH17 | 31 | 349 | 0 |
IGVNYGRVANNLPAPAEVVSLLKSHGINRIKLYDTDSDVLTALAGSSINVVVALPNELLSSVAADQSFADSWVKGNISQHFPQTKIEAIAVGNEVFVDPK NTTPFLVPAMKNVHNSLVKFNLSSIKISSPIALSALQSSYPSSAGSFKTELIGPVIKPMLDFLRQTGSYLMINAYPFFAYAANADVISLDYALLKENQGV VDSGNGLKYNSLLEAQLDAVHAAMSAIQYNDVKMVVTETGWPSLGDEDEIGAGEANAASYNGNLVKRVLTGNGTPLRPQEPLNVYLFALFNENEKPGPTS ERNYGLFYPNEKRVYDVPF |
Full Sequence |
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Protein Sequence Length: 477 Download |
MTSLSTFTFS FLLLSFSPSF SFFYAFAAGT IGVNYGRVAN NLPAPAEVVS LLKSHGINRI 60 KLYDTDSDVL TALAGSSINV VVALPNELLS SVAADQSFAD SWVKGNISQH FPQTKIEAIA 120 VGNEVFVDPK NTTPFLVPAM KNVHNSLVKF NLSSIKISSP IALSALQSSY PSSAGSFKTE 180 LIGPVIKPML DFLRQTGSYL MINAYPFFAY AANADVISLD YALLKENQGV VDSGNGLKYN 240 SLLEAQLDAV HAAMSAIQYN DVKMVVTETG WPSLGDEDEI GAGEANAASY NGNLVKRVLT 300 GNGTPLRPQE PLNVYLFALF NENEKPGPTS ERNYGLFYPN EKRVYDVPFT LEQLGNGQSM 360 PVNKSNSPAP SVQSGGDVST TSSVGQTWCV ANGNAGAEKL QAGLDYACGE GGADCRPIQT 420 GSTCYNPNTV EAHASYAFNS YYQKKARGAG TCDFGGAAYV VTQQPRFGNC KFPTGY* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 3.0e-25 | 388 | 459 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-40 | 388 | 472 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-94 | 31 | 349 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL77689.1 | 0 | 22 | 476 | 19 | 460 | AT5g55180/MCO15_13 [Arabidopsis thaliana] |
RefSeq | NP_568822.1 | 0 | 19 | 476 | 16 | 460 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002278044.1 | 0 | 7 | 476 | 6 | 471 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316783.1 | 0 | 28 | 476 | 1 | 449 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529472.1 | 0 | 25 | 476 | 25 | 472 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 31 | 349 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 31 | 349 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 31 | 349 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghr_A | 0 | 31 | 349 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1aq0_B | 0 | 31 | 349 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |