Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.014G158400.1 |
Family | CBM43 |
Protein Properties | Length: 487 Molecular Weight: 52580.9 Isoelectric Point: 6.362 |
Chromosome | Chromosome/Scaffold: 14 Start: 12352687 End: 12354771 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 382 | 460 | 9.2e-32 |
WCVANPDAGKEKLQAALDFACGEGGADCRPIQPDATCYSPNTLVAHSSFAFNSYYQKKGRGMGDCYFGGAAFVVTQEPS | |||
GH17 | 24 | 343 | 0 |
VGVNYGRIANNLPSAVKVVNLVKSQGLERVKVYDTDPAVLKALSGSGIKVTVDLPNQLLYSAAKYPNFARSWVQKNIVAYHPSTQIESIAVGNEVFVDPH NTTKFLIPAMKNIHQALVKFNLHSSIKVSSPIALSALQSSYPSSAGSFRPELIEPVFKPMLDFLRQTGSYLMVNAYPFFAYESNSDVISLDYALFRENPG VVDSGNGLKYFNLFDAQIDAVFAALSALKYDDVKMVVTETGWPSKGDENEVGASVENAAAYNGNLVRRILTGGGTPLKPQADLTVYLFALFNENEKDGPT SERNYGLFYPDQQKVYDIPF |
Full Sequence |
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Protein Sequence Length: 487 Download |
MDPNFLPCFL LLLCVVAFAD AGSVGVNYGR IANNLPSAVK VVNLVKSQGL ERVKVYDTDP 60 AVLKALSGSG IKVTVDLPNQ LLYSAAKYPN FARSWVQKNI VAYHPSTQIE SIAVGNEVFV 120 DPHNTTKFLI PAMKNIHQAL VKFNLHSSIK VSSPIALSAL QSSYPSSAGS FRPELIEPVF 180 KPMLDFLRQT GSYLMVNAYP FFAYESNSDV ISLDYALFRE NPGVVDSGNG LKYFNLFDAQ 240 IDAVFAALSA LKYDDVKMVV TETGWPSKGD ENEVGASVEN AAAYNGNLVR RILTGGGTPL 300 KPQADLTVYL FALFNENEKD GPTSERNYGL FYPDQQKVYD IPFTVEGLKN YKAPSRSPVS 360 GGQQVSAPVR GGVSKSTTGN TWCVANPDAG KEKLQAALDF ACGEGGADCR PIQPDATCYS 420 PNTLVAHSSF AFNSYYQKKG RGMGDCYFGG AAFVVTQEPS AYFSLISSIS CLFSLLLANL 480 CMISLI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 5.0e-5 | 196 | 334 | 149 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 7.0e-26 | 381 | 452 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-37 | 381 | 460 | 80 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-107 | 24 | 343 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD26909.1 | 0 | 20 | 462 | 21 | 464 | putative beta-1,3-glucanase [Arabidopsis thaliana] |
RefSeq | XP_002274828.1 | 0 | 1 | 459 | 1 | 460 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002302861.1 | 0 | 1 | 459 | 1 | 459 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333242.1 | 0 | 1 | 459 | 1 | 459 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525335.1 | 0 | 19 | 470 | 19 | 469 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 24 | 343 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 24 | 343 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 24 | 343 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_D | 0 | 24 | 344 | 2 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_C | 0 | 24 | 344 | 2 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |